| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,857,768 – 12,857,884 |
| Length | 116 |
| Max. P | 0.669902 |
| Location | 12,857,768 – 12,857,884 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.23 |
| Shannon entropy | 0.49355 |
| G+C content | 0.38864 |
| Mean single sequence MFE | -17.34 |
| Consensus MFE | -8.00 |
| Energy contribution | -7.24 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.669902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12857768 116 + 21146708 -CCUUUUACAAACCCCAAACCAAUCAUUGCUGCAUUGUUAUGCAUACAUGUGACUUUUCCCUGUCGAUACAGCAUAGUAAUUCAUUUCACUUUCCCAGUUU--UUCC-ACAGCACAAUUU -..........................(((((.((((((((((.......((((........)))).....)))))))))).......(((.....)))..--....-.)))))...... ( -14.10, z-score = -1.24, R) >droSec1.super_1 10366406 116 + 14215200 -CCUUUUACAAACCCCAAACCAAUCUUUGCUGCAUUGUUAUGCAUACAUGUGACUUUUCCCUGUCGAUGCAGCGUAGUAAUUCAUUUCACUUUCCCAGUUU--UUAC-CCAGCACAAUUU -.......................((.(((((((((..((((....)))).(((........)))))))))))).))........................--....-............ ( -16.60, z-score = -1.53, R) >droYak2.chr2R 2529127 117 - 21139217 CCCUUUUGCAAGCCCCAAACCAAUCUAUGCUGCAUUGUUAUGCAUUCAUGUGACUU-UUCCUGUCGCUACAGCAUAGUAAUUCAUUUCACUUUCAUACUUU--UCUCCCCACCACAAUUU ......((.(((............(((((((((((....))))......(((((..-.....)))))...)))))))............))).))......--................. ( -18.85, z-score = -3.15, R) >droEre2.scaffold_4845 9603053 116 - 22589142 CCUUUUUGCAAACCCCAAACCAAUCAGUGCUGCAUUGUUGUGCAUACAUGUGACU--UCCCUGUCGAUACAGCACAGUAAUUCAUUUCACUUUCCCAUUUU--UUUCGCCAGCACAAUUU ..........................(((((((((((((((((.......((((.--.....)))).....))))))))))....................--....).))))))..... ( -18.45, z-score = -1.14, R) >droAna3.scaffold_13266 6144548 108 - 19884421 ---UAUUCCAAGACCUACACCA-------UUUCGUUAUUAAAUAUUUAC-UGAAUA-UUAAUGCGGAGGAAAUUCGUCAAUUAAUUUCCCUUUGAUUGAUUGACUCGCACAUCGCCAGUC ---..((((..(........).-------.(((((.(((((.(((((..-.)))))-))))))))))))))....(((((((((((.......)))))))))))..((.....))..... ( -18.70, z-score = -1.25, R) >consensus _CCUUUUACAAACCCCAAACCAAUCAUUGCUGCAUUGUUAUGCAUACAUGUGACUU_UCCCUGUCGAUACAGCAUAGUAAUUCAUUUCACUUUCCCAGUUU__UUCC_CCAGCACAAUUU ..............................((.((((((((((.......((((........)))).....)))))))))).)).................................... ( -8.00 = -7.24 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:39 2011