| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,856,557 – 12,856,666 |
| Length | 109 |
| Max. P | 0.662177 |
| Location | 12,856,557 – 12,856,666 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 82.94 |
| Shannon entropy | 0.31545 |
| G+C content | 0.55767 |
| Mean single sequence MFE | -36.35 |
| Consensus MFE | -24.74 |
| Energy contribution | -25.83 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.662177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12856557 109 + 21146708 CAUGGCAUAUUAAGUGCCAGCAAUUUACCAAAACGAAGCAUGCAACCCGGGCAGCCACAUUGAAAAUAGGAGGCGUCACGGGUGGCAGAGGGCGUGGCACACACGAGAG------- ..((((((.....))))))..................((.(((.((((((((.(((.(..(....)...).)))))).))))).)))....))(((.....))).....------- ( -34.50, z-score = -2.12, R) >droSim1.chr2R 11593016 109 + 19596830 CAUGGCAUAUUAAGUGCCAGCAAUUUACCAAAACGAAGCAUGCAACCCGGGCAGCCACAUUCAAAAUGGG-GGCUUCACGGGUGGCAGAGGGCGUGGCACACACGAGAGG------ ..((((((.....))))))........((........((.(((.(((((((.((((.(((.....)))..-)))))).))))).)))....))(((.....)))....))------ ( -35.90, z-score = -1.96, R) >droSec1.super_1 10365194 109 + 14215200 CAUGGCAUAUUAAGUGCCAGCAAUUUACCAAAACGAAGCAAGCAACCCGGGCAGCCACAUUCAAAAUGGG-GGCUUCACGGGUGGCAGAGGGCGUGGCACACACGAGAGG------ ..((((((.....))))))........((............((.(((((((.((((.(((.....)))..-)))))).))))).))......((((.....))))...))------ ( -33.90, z-score = -1.64, R) >droYak2.chr2R 2528016 107 - 21139217 CAUGGCAUAUUAAGUGCCAGCAAUUUACCAAAGCGAAGCAUGCAACCCGGGCAGUCACAUUGAAA---GGGGGCGUCACGGGUGGCAGAGGGCGUGGCACACACGAAGGG------ ..((((((.....))))))........((........((.(((.((((((((.(((...((....---)).)))))).))))).)))....))(((.....)))...)).------ ( -35.00, z-score = -1.72, R) >droEre2.scaffold_4845 9601865 107 - 22589142 CAUGGCAUAUUAAGUGCCAGCAAUUUACCAAAACGAAGCAUGCAACCCGGGCAGCCACAUUGAAA---AGGGGCGUCACGGGUGGCAGGGGGCGUGGCACACACGAAGGG------ ..((((((.....))))))........((........((.(((.((((((((.(((...((....---)).)))))).))))).)))....))(((.....)))...)).------ ( -37.90, z-score = -2.30, R) >droAna3.scaffold_13266 6143540 110 - 19884421 CAUGGCAUAUUAAGUGCCAGCCAUUUGCCAAAGCGAGGCAUGCAACGUGUUUUCCCCCAAUUGGUAAGGGGGGCGGUCUGGA------AGGGCGUGGCCCUCACAAAGGGGCGUAA ..((((((.....))))))(((.....(((..((((((((((...))))))))(((((.........)))))))....))).------..)))...(((((......))))).... ( -40.90, z-score = -0.32, R) >consensus CAUGGCAUAUUAAGUGCCAGCAAUUUACCAAAACGAAGCAUGCAACCCGGGCAGCCACAUUGAAAAUGGGGGGCGUCACGGGUGGCAGAGGGCGUGGCACACACGAAAGG______ ..((((((.....))))))........((........((.(((.(((((....(((...............)))....))))).)))....))(((.....)))....))...... (-24.74 = -25.83 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:39 2011