| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,089,231 – 3,089,321 |
| Length | 90 |
| Max. P | 0.711111 |
| Location | 3,089,231 – 3,089,321 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 70.26 |
| Shannon entropy | 0.53120 |
| G+C content | 0.29852 |
| Mean single sequence MFE | -12.88 |
| Consensus MFE | -4.42 |
| Energy contribution | -4.64 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.711111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3089231 90 - 23011544 -UUUAAUACUCUUC-UUCAACACUUCUUUUUUU-----------GGGUUUUUAUGCUCAGCUUGGCAAAUACGAUAUUUCGUUUUUUUUUUGCCAUUUCAUUA -.............-................((-----------((((......))))))..(((((((.((((....))))......)))))))........ ( -15.20, z-score = -3.83, R) >droWil1.scaffold_180708 984149 91 - 12563649 GUUUAAUGAUCAGCAGUUUUUAUAUUGUCUUUU------------UGCUUUACCUCGUCACAAGCUGAUUUUUAUUUAUAACUUCAUUUUUGUCAAGUAAUGG ...(((.(((((((...................------------..................))))))).)))..(((.((((.((....)).)))).))). ( -7.79, z-score = 0.99, R) >droEre2.scaffold_4929 3131742 84 - 26641161 UUUUAAUACU---C-UUCAACACUUCGUUUUUU------------GGUUAUUAUGCUCAGCUUGGCAAAUACGAUUUUUCG---UCUUUUUGCCAUUUCAUUA ...(((((..---(-...(((.....)))....------------)..))))).........(((((((.((((....)))---)...)))))))........ ( -13.20, z-score = -2.76, R) >droYak2.chr2L 3080466 87 - 22324452 UUGUAAUACUCUUC-UUCAACACUUCGUUUUUU------------GGUUAUUAUGUACAGCUUGGCAAAUGCGAUUUUUGG---UCUUUUUGCCAUUUCAUUA ..((((((..((..-...(((.....)))....------------)).))))))........(((((((...(((.....)---))..)))))))........ ( -11.30, z-score = -0.26, R) >droSec1.super_5 1241016 92 - 5866729 UUUUAAUACUCUUC-UUCAACAGUUCGUUUUUU-------UUUUGAGUUAUUAUGCUCAGCUUGGCAAAUACCAUUUUUCG---UCUUUUUGCCAUUUCAUUA ..............-..................-------..((((((......))))))..(((((((.((........)---)...)))))))........ ( -12.40, z-score = -2.38, R) >droSim1.chr2L 3027188 96 - 22036055 ---UUAUACUCUUC-UUCAACACUUCGUUUUUUUUUUUUUUUUUGAGUUAUUAUGCUCAGCUUGGCAAAUACGAUUUUUCG---UCCUUUUGCCAUUUCAUUA ---...........-...........................((((((......))))))..(((((((.((((....)))---)...)))))))........ ( -17.40, z-score = -4.68, R) >consensus UUUUAAUACUCUUC_UUCAACACUUCGUUUUUU____________GGUUAUUAUGCUCAGCUUGGCAAAUACGAUUUUUCG___UCUUUUUGCCAUUUCAUUA ..............................................................(((((((...................)))))))........ ( -4.42 = -4.64 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:00 2011