| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,848,354 – 12,848,459 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 12,848,354 – 12,848,459 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 87.92 |
| Shannon entropy | 0.19323 |
| G+C content | 0.45948 |
| Mean single sequence MFE | -15.66 |
| Consensus MFE | -13.42 |
| Energy contribution | -13.66 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 12848354 105 - 21146708 CAGCAACAUGCCAGCCGUCCUGCUGUUGCUUCAGCAUCAUAAAUAUUCAACAAAGUUAAGUUGUCAUAGCUAGUUGAGGACCGAUUUCCCACACUCCACACCCCC ..((.....)).....(((((((((......)))))..........(((((..(((((.(....).))))).)))))))))........................ ( -18.60, z-score = -0.76, R) >droSim1.chr2R 11584606 94 - 19596830 -----------CAGCCGUCCUGCUGUUGCUUCAGCAUCAUAAAUAUUCAACGAAGUUAAGUUGUCAUAGCUAGUUGAAGACCGAUUUCCCACACCCCACACCCCC -----------.....(((.(((((......))))).........((((((..(((((.(....).))))).)))))))))........................ ( -16.70, z-score = -2.04, R) >droSec1.super_1 10351750 94 - 14215200 -----------CAGCCGUCCUGCUGUUGCUUCAGCAUCAUAAAUAUUCAACAAAGUUAAGUUGUCAUAGCUAGUUGAAGACCGAUUUCCAACACCCCACACCCCC -----------.....(((.(((((......))))).........((((((..(((((.(....).))))).)))))))))........................ ( -15.30, z-score = -1.71, R) >droYak2.chr2R 2519057 87 + 21139217 -----------CAGCCGUCCUGCUGUUGCUUCAGCAUCAUAAAUAUUCAACAAAGUUAAGUUGUCAUAGCUAGUUGAAGACCGAUUUCCCACACUCCC------- -----------.....(((.(((((......))))).........((((((..(((((.(....).))))).))))))))).................------- ( -15.30, z-score = -1.39, R) >droEre2.scaffold_4845 9593440 87 + 22589142 -----------CAGCCGACCUGCUGUUGCUUCAGCAUCAUAAAUAUUCAAGAAAGUUAAGUUGUCAUAGCUAGUUGAAGACCGAUUUCCCACACCCCC------- -----------((((......))))...(((((((.((............)).(((((.(....).))))).)))))))...................------- ( -12.40, z-score = -0.33, R) >consensus ___________CAGCCGUCCUGCUGUUGCUUCAGCAUCAUAAAUAUUCAACAAAGUUAAGUUGUCAUAGCUAGUUGAAGACCGAUUUCCCACACCCCACACCCCC ................(((.(((((......))))).........((((((..(((((.(....).))))).)))))))))........................ (-13.42 = -13.66 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:35 2011