| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,844,973 – 12,845,032 |
| Length | 59 |
| Max. P | 0.976231 |
| Location | 12,844,973 – 12,845,032 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 90.00 |
| Shannon entropy | 0.17983 |
| G+C content | 0.35254 |
| Mean single sequence MFE | -12.36 |
| Consensus MFE | -11.56 |
| Energy contribution | -11.60 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.976231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12844973 59 - 21146708 AAUUUUCUCAAGAAAAUUCUUUGUUGUUUUGGUCAACCACCCAAGUCAGCUGAUUCUGA (((((((....)))))))....((((.(((((........))))).))))......... ( -10.40, z-score = -0.83, R) >droSim1.chr2R 11581227 59 - 19596830 AAUUUUCUCAAACAAAUUCUUUGUUGUUUUGGUUAGCCACCCAAAACAGCUGAUUCUGA ............((...((...((((((((((........)))))))))).))...)). ( -13.00, z-score = -2.53, R) >droSec1.super_1 10348335 59 - 14215200 AAUUUUCUCAAACAAAUUCUUUGUUGUUUUGGUUAGCCACCCAAAACAGCUGAUUCUGA ............((...((...((((((((((........)))))))))).))...)). ( -13.00, z-score = -2.53, R) >droYak2.chr2R 2515745 59 + 21139217 AAUUUUCUUCGAUAACUUCUUUGUUGUUUUGGUCAGCCACCCAAAACAGCUGAUUCUGA .................((...((((((((((........)))))))))).))...... ( -12.30, z-score = -2.19, R) >droEre2.scaffold_4845 9590033 59 + 22589142 AAUUUUCUCAGAUAAUUUCUUUGUUGUUUUGGUCAGCCACCCAAAACAGCUGACUUUGA ............(((..((...((((((((((........)))))))))).))..))). ( -13.10, z-score = -2.19, R) >consensus AAUUUUCUCAAACAAAUUCUUUGUUGUUUUGGUCAGCCACCCAAAACAGCUGAUUCUGA .................((...((((((((((........)))))))))).))...... (-11.56 = -11.60 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:34 2011