| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,811,078 – 12,811,154 |
| Length | 76 |
| Max. P | 0.691304 |
| Location | 12,811,078 – 12,811,154 |
|---|---|
| Length | 76 |
| Sequences | 6 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 76.69 |
| Shannon entropy | 0.45065 |
| G+C content | 0.56758 |
| Mean single sequence MFE | -24.88 |
| Consensus MFE | -14.59 |
| Energy contribution | -16.37 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.691304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12811078 76 + 21146708 GUUAACCGCGGCGAAGGUUGCGGUUAGGCAGAUGUAAGCCAAGAUCCGCCCC-AGCGCGAAUUAAUAUCCACUCCUC ..((((((((((....))))))))))(((........)))....(((((...-.))).))................. ( -25.10, z-score = -2.15, R) >droSim1.chr2R 11547573 77 + 19596830 GUUAACCGCGUCGAAGGUUGCGGUUGGGCAGAUGUAAGCCAAGAUCCGCCCCAAACGCGAAUUAAUAUCCACUCCUC ((((((((((.(....).)))))))((((.(((.(......).))).))))..)))..................... ( -21.50, z-score = -1.29, R) >droSec1.super_1 10314910 77 + 14215200 GUUAACCGCGUCGAAGGUUGCGGUUGGGAAGAUGUAAGCCACGAUCCGCCCCCAACGCAAAUUGAUAUCCACUCCUC ((((((((((.(....).)))))))(((..(((((.....)).)))..)))..)))..................... ( -17.50, z-score = 0.28, R) >droYak2.chr2R 2480609 77 - 21139217 GGUAACCGCGGCGAAGGUUGCGGUUGGCCAGCUGUAAGCGAAGAUUCGCCCCCAUCGCGUAUUAAUCUCUUGUCCUC ((((((((((((....))))))))).)))........((((((((((((.......)))....))))).)))).... ( -25.20, z-score = -1.08, R) >droEre2.scaffold_4845 9554989 76 - 22589142 GGUAACCGCGGCGAAGGUUGCGGUUGGGCAGAUGUAAGCGAAGAUCCGCCCC-AUCGCGAAUUAAUCUGUUGUCCUC ((((((((((((....))))))))))(((((((....((((.(........)-.))))......)))))))..)).. ( -29.50, z-score = -2.33, R) >droPer1.super_2 6981620 69 + 9036312 ---UGUGGAGGCGAAGGUU--GGCUGG-CGGUUGUGACC--AGAUCAACCCUCACCCCGUGGGGAGCUCCGCUCAUC ---.((((((.(((.((((--((((((-((....)).))--)).)))))).)).(((....))).)))))))..... ( -30.50, z-score = -1.60, R) >consensus GUUAACCGCGGCGAAGGUUGCGGUUGGGCAGAUGUAAGCCAAGAUCCGCCCCCAACGCGAAUUAAUAUCCACUCCUC ...(((((((((....)))))))))((((.(((.(......).))).)))).......................... (-14.59 = -16.37 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:30 2011