| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,805,024 – 12,805,116 |
| Length | 92 |
| Max. P | 0.533207 |
| Location | 12,805,024 – 12,805,116 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 79.64 |
| Shannon entropy | 0.39137 |
| G+C content | 0.32246 |
| Mean single sequence MFE | -17.78 |
| Consensus MFE | -8.28 |
| Energy contribution | -9.20 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.533207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12805024 92 - 21146708 CAAAAGUUUUAAUGGUUUUUAAUUACUUUUGAUAGAGUAAAUACAGAAGCCAAAGCUUUGGA-AAUAAAUACACCAACCGAAAGUUUGCAACA ..(((((((...((((((((..(((((((....)))))))....)))))))))))))))...-...........(((.(....).)))..... ( -16.90, z-score = -1.87, R) >droAna3.scaffold_13266 6092132 92 + 19884421 CAGAAGUUGCAAUGACUUUUAAUUACUCUCAAUAAACCCACAAAAAAAGUAGUCACUACAGGCAAAAAAUAAACCAGGGGAAAGUUU-CUGCG ........(((..(((((((.(((......)))...(((.........((((...)))).((...........)).)))))))))).-.))). ( -14.70, z-score = -0.81, R) >droEre2.scaffold_4845 9549068 92 + 22589142 CAAAAGUUUUAAUGGCUUUCAAUUACAUUUGAUAGAGUAAAUAUAGAAGCUGAAGCUUCAGA-GCUAAAUACGCCAACCGAAAGUUUGCAGCC ....((((((....((((((((......))))..)))).......(((((....))))))))-)))......((.((.(....))).)).... ( -17.30, z-score = -0.86, R) >droYak2.chr2R 2473956 92 + 21139217 CGAAAGUUUUAAUGGUUUUUAAUUACUUUUGAUAGAGCAAAUAUAGAAGCUGAAGCUUCCGA-AAUAAGUACGACAACUAAAAGUUUGCAACC (((((((.((((......))))..))))))).....((((((...(((((....)))))...-....(((......)))....)))))).... ( -18.30, z-score = -2.00, R) >droSec1.super_1 10309016 92 - 14215200 UAAAACUUUUAAUGGUUUUUAAUUACUUUUGAUAGAGUAAAUACAGAAGCCGAAGCUUCGGA-AAUAAAUACACCAAACGAAAGUUUGCAACG ..((((((((..((((.((((.(((((((....))))))).....(((((....)))))...-..))))...))))...))))))))...... ( -19.60, z-score = -3.21, R) >droSim1.chr2R 11541315 92 - 19596830 CAAAAGUUUUAAUGGUUUUUAAUUACUUUUGAUAGAGUAAAUACAGAAGCCGAAGCUUCGGA-AAUAAAUACACCAAACGAAAGUUUGCAACA (..(((((((...(((((((..(((((((....)))))))....))))))))))))))..).-...........(((((....)))))..... ( -19.90, z-score = -3.11, R) >consensus CAAAAGUUUUAAUGGUUUUUAAUUACUUUUGAUAGAGUAAAUACAGAAGCCGAAGCUUCGGA_AAUAAAUACACCAACCGAAAGUUUGCAACA ..(((.((((..((((......(((((((....))))))).....(((((....))))).............))))...)))).)))...... ( -8.28 = -9.20 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:28 2011