| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,804,766 – 12,804,824 |
| Length | 58 |
| Max. P | 0.882473 |
| Location | 12,804,766 – 12,804,824 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 80.17 |
| Shannon entropy | 0.32936 |
| G+C content | 0.34997 |
| Mean single sequence MFE | -9.82 |
| Consensus MFE | -7.65 |
| Energy contribution | -7.15 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.882473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12804766 58 + 21146708 GCCGUAGUGAAACACAAGAGCCAUUGUCUUAUGAAAUACAAAUUGGUAUUUCAUAGAU (((...(((...)))..).))....((((.(((((((((......))))))))))))) ( -12.20, z-score = -2.26, R) >droYak2.chr2R 2473664 52 - 21139217 -----GGUAAAACG-AAACGCAAGUGCCCUUUGAAAUUCAAAACAGCAUUUCAUAGAU -----(((......-..((....)))))((.((((((.(......).)))))).)).. ( -7.10, z-score = -0.81, R) >droSec1.super_1 10308770 58 + 14215200 GCCCUAGUGAAACAAAAGCGCAAGUGCCUUAUGAAAUUCAAAUUUGUAUUUCAUAGAU ((.((.(((.........))).)).)).(((((((((.((....)).))))))))).. ( -10.00, z-score = -1.76, R) >droSim1.chr2R 11541059 58 + 19596830 GCCCUAGUGAAACAAAAGCGCAAGUGCCUUAUGAAAUUCAAAUUUGUAUUUCAUAGAU ((.((.(((.........))).)).)).(((((((((.((....)).))))))))).. ( -10.00, z-score = -1.76, R) >consensus GCCCUAGUGAAACAAAAGCGCAAGUGCCUUAUGAAAUUCAAAUUUGUAUUUCAUAGAU .................((....))...(((((((((.(......).))))))))).. ( -7.65 = -7.15 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:28 2011