| Sequence ID | dm3.chr2L |
|---|---|
| Location | 340,754 – 340,851 |
| Length | 97 |
| Max. P | 0.940148 |
| Location | 340,754 – 340,851 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 91.65 |
| Shannon entropy | 0.15067 |
| G+C content | 0.67023 |
| Mean single sequence MFE | -42.06 |
| Consensus MFE | -35.59 |
| Energy contribution | -37.48 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.940148 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 340754 97 + 23011544 AGGAUGGGGGCGUGACCAGGAGCACCGCCAACGGUGACGUUGCCACUGGAACAGGAACCGGAAGUGCUGCUGGGACAGCAGGACACGCGCCGCCGUU ..(((((.((((((.((((.(((((.(.(((((....))))).).((((........))))..))))).))))..(....)....)))))).))))) ( -46.10, z-score = -2.81, R) >droEre2.scaffold_4929 396242 97 + 26641161 AGGAUGGGGGCGUGACCAGGAGCACCGCCAACGGGGACGUUGCCACGGGAACAGGAACCGGAAGUGCUGCUGGGACAGCAGGACACGCACCGCCGUU ..((((((((((((.((((.(((((.(.(((((....))))).).(((.........)))...))))).))))..(....)..))))).)).))))) ( -43.40, z-score = -2.53, R) >droYak2.chr2L 337470 82 + 22324452 AGGAUGGGGGCGUGACCAGGAGCACCGCCAACGGGGACGUUGCCACGGGAACAGGAACCGGAAGUG---------------GACACGCACCGCCGUU ..((((((((((((.(((((....))(.(((((....))))).).(((.........)))....))---------------).))))).)).))))) ( -33.00, z-score = -1.31, R) >droSec1.super_14 337935 97 + 2068291 AGGAUGGGGGCGUGACCAGGGGCACCGCCAACGGGGACGUUGCCACGGGAACAGGAACCGGAAGUGCUUCUGGGACAGCAGGACACGCACCGCCGUU ..((((((((((((.((((((((((.(.(((((....))))).).(((.........)))...))))))))))..(....)..))))).)).))))) ( -44.40, z-score = -2.62, R) >droSim1.chr2L 360305 97 + 22036055 AGGAUGGGGGCGUGACCAGGGGCACCGCCAACGGGGACGUUGCCACGGGAACAGGAACCGGAAGUGCUGCUGGGACAGCAGGACACGCACCGCCGUU ..((((((((((((.((((.(((((.(.(((((....))))).).(((.........)))...))))).))))..(....)..))))).)).))))) ( -43.40, z-score = -2.11, R) >consensus AGGAUGGGGGCGUGACCAGGAGCACCGCCAACGGGGACGUUGCCACGGGAACAGGAACCGGAAGUGCUGCUGGGACAGCAGGACACGCACCGCCGUU ..((((((((((((.((((.(((((.(.(((((....))))).).(((.........)))...))))).))))..(....)..))))).)).))))) (-35.59 = -37.48 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:34 2011