| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,793,617 – 12,793,788 |
| Length | 171 |
| Max. P | 0.972425 |
| Location | 12,793,617 – 12,793,788 |
|---|---|
| Length | 171 |
| Sequences | 4 |
| Columns | 172 |
| Reading direction | forward |
| Mean pairwise identity | 95.14 |
| Shannon entropy | 0.07766 |
| G+C content | 0.52699 |
| Mean single sequence MFE | -38.43 |
| Consensus MFE | -36.22 |
| Energy contribution | -36.23 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.972425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12793617 171 + 21146708 GAUAAAACUGUUGCGCGCCAACGCAGCCUUUUGUCCAAUGAAAUAGACAAAGUAAGUCGCUUAAGUCGGUCGCUUCCUCUACUUUCACCCAGUCUCGCCUCCC-UGCCACCCUUUCCCCCACUGAAGGGUCCUUUCCCUUUUCCCUGCCGCUUUGGCUUUUACUUUCUCUGC (((((((..((((((......)))))).)))))))........((((.((((((((..(((.(((.((((..........................((.....-.)).(((((((........)))))))................))))))).))).)))))))).)))). ( -39.60, z-score = -2.24, R) >droEre2.scaffold_4845 9537378 171 - 22589142 GAUAAAACUGUUGCGCGCCAACGCAGCCUUUUGUCCAAUGAAAUAGACAAAGUAAGUCGCUUAAGUCGGUCGCUUCCUCUACUUUCACCCAGUUCCAGCUCCC-CUCCUCCUCCUCCUCCACUCAAGGGUCCUUUCCCUUUUCCCUGCCGCUUCGGCUUUUACUUUCUCUGC (((((((..((((((......)))))).)))))))........((((.((((((((..(((.(((.((((.(((......(((.......)))...)))....-....................(((((......)))))......))))))).))).)))))))).)))). ( -38.80, z-score = -2.98, R) >droSec1.super_1 10297597 171 + 14215200 GAUAAAACUGUUGCGCGCCAACGCAGCCUUUUGUCCAAUGAAAUAGACAAAGUAAGUCGCUUAAGUCGGUCGCUUCCUCUACUUUCACCCAGUCCCGCCCCCC-UGCCACCCUUUCCCCCGCUCAAGGGUCCUUUCCCUUUUCCCUGCCGCUUCGGCUUUUACUUUCUCUGC (((((((..((((((......)))))).)))))))........((((.((((((((..(((.(((.((((.((.......(((.......)))...((.....-.)).............))..(((((......)))))......))))))).))).)))))))).)))). ( -37.90, z-score = -1.98, R) >droSim1.chr2R 11529847 172 + 19596830 GAUAAAACUGUUGCGCGCCAACGCAGCCUUUUGUCCAAUGAAAUAGACAAAGUAAGUCGCUUAAGUCGGUCGCUUCCUCUACUUUCACCCAGUCCCGCCCCCCCUGCCACCCUUUCCCCCGCUCAAGGGUCCUUUCCCUUUUCCCUGCCGCUUCGGCUUUUACUUUCUCUGC (((((((..((((((......)))))).)))))))........((((.((((((((..(((.(((.((((.((.......(((.......)))...((.......)).............))..(((((......)))))......))))))).))).)))))))).)))). ( -37.40, z-score = -1.96, R) >consensus GAUAAAACUGUUGCGCGCCAACGCAGCCUUUUGUCCAAUGAAAUAGACAAAGUAAGUCGCUUAAGUCGGUCGCUUCCUCUACUUUCACCCAGUCCCGCCCCCC_UGCCACCCUUUCCCCCACUCAAGGGUCCUUUCCCUUUUCCCUGCCGCUUCGGCUUUUACUUUCUCUGC (((((((..((((((......)))))).)))))))........((((.((((((((..(((.(((.((((..........(((.......)))...............................(((((......)))))......))))))).))).)))))))).)))). (-36.22 = -36.23 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:25 2011