| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,761,487 – 12,761,576 |
| Length | 89 |
| Max. P | 0.570113 |
| Location | 12,761,487 – 12,761,576 |
|---|---|
| Length | 89 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 72.82 |
| Shannon entropy | 0.52329 |
| G+C content | 0.41809 |
| Mean single sequence MFE | -17.21 |
| Consensus MFE | -9.11 |
| Energy contribution | -10.50 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12761487 89 + 21146708 AAUCCAUCUGGGUUCGCUGUAAAAUAAAGCCAGUUUAUAGGAAUAGCUUUAUACUA-UAAAGCCGGCUGUAACAUCCGCCCAUUUCCACU ........(((((..(.(((.......((((.((((((((.............)))-).)))).))))...))).).)))))........ ( -17.12, z-score = -0.56, R) >droEre2.scaffold_4845 9498760 88 - 22589142 AAUCAACCUCGGUUCGCUGUAAGC-AAAGCCAGCUUAUAGUAAACGCUUUAUACUA-UAAAGGCGGCUGUUACAUCCGCCCAUUUCCACU ...........(((..((((((((-.......))))))))..)))...........-....(((((.((...)).))))).......... ( -22.80, z-score = -2.65, R) >droYak2.chr2R 4925755 89 - 21139217 AAUCCAAAUGGGUUCGCUGUAAACUAAAGCCAGCUUAUGGGAACAGCUCUAUACUA-UAAAGCCAGCUAUUACAUCCGCCCACUUCCACU ........(((((..(.(((((.....(((..((((((((.............)))-).))))..))).))))).).)))))........ ( -16.92, z-score = -0.49, R) >droSec1.super_1 10265970 89 + 14215200 AAUCCAUCUGGGUUCGCUGUAAACCAAAGCCAGUUUAUAGGAAUAGCUUUAUACUA-UAAAGCCGGCUGUAACAUCCGCCCAUUUCAAAU ........(((((((.((((((((........)))))))))))..(((((((...)-))))))(((.((...)).)))))))........ ( -19.20, z-score = -1.44, R) >droSim1.chr2R 11497193 89 + 19596830 AAUCCAUCUGGGUUCGCUGUAAACCAAAGCCAGUUUAUAGGAAUAGCUUUAUACUA-UAAAGCCGGCUGUAACAUCCGCCCAUUUCAACU ........(((((((.((((((((........)))))))))))..(((((((...)-))))))(((.((...)).)))))))........ ( -19.20, z-score = -1.36, R) >droGri2.scaffold_15112 436958 82 - 5172618 --UGAUACUAAAACCCCGACAAAU---AGCGAGCUUAUUGUCGCUGCGACGCACAAAUAAAGCUGAACAACCAAUCUACAAACAAUA--- --.(((..........((......---..))(((((.((((.((......))))))...))))).........)))...........--- ( -8.00, z-score = -0.05, R) >consensus AAUCCAUCUGGGUUCGCUGUAAAC_AAAGCCAGCUUAUAGGAAUAGCUUUAUACUA_UAAAGCCGGCUGUAACAUCCGCCCAUUUCAACU ........(((((...((((((((........)))))))).....((((((......))))))..............)))))........ ( -9.11 = -10.50 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:22 2011