| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,722,913 – 12,723,025 |
| Length | 112 |
| Max. P | 0.762747 |
| Location | 12,722,913 – 12,723,025 |
|---|---|
| Length | 112 |
| Sequences | 11 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 91.38 |
| Shannon entropy | 0.17819 |
| G+C content | 0.28018 |
| Mean single sequence MFE | -20.26 |
| Consensus MFE | -19.05 |
| Energy contribution | -18.88 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.762747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12722913 112 - 21146708 AUUAUUAACGAUCAUUAUGAAGUUUUAACUUAAGUGGUCAAUUAACAUUUGCAUGACUGAAAUCGGAAUUGGAAAUUAGUGUAUGACUAAUUAAUGCACAGAAAUGAAGAAA------ .........(((((((...((((....)))).)))))))..........(((((..(((....))).......(((((((.....))))))).)))))((....))......------ ( -20.00, z-score = -1.10, R) >droSim1.chr2R 11458520 112 - 19596830 AUUAUUAACGAUCAUUAUGAAGUUUUAACUUAAGUGGUCAAUUAACAUUUGCAUGACUGAAAUCGGAAUUGGAAAUUAGUGUAUGACUAAUUAAUGCACAGAAAUGAGGAAA------ .........(((((((...((((....)))).)))))))..........(((((..(((....))).......(((((((.....))))))).)))))((....))......------ ( -20.00, z-score = -1.01, R) >droSec1.super_1 10227663 112 - 14215200 AUUAUUAACGAUCAUUAUGAAGUUUUAACUUAAGUGGUCAAUUAACAUUUGCAUGACUGAAAUCGGAAUUGGAAAUUAGUGUAUGACUAAUUAAUGCACAGAAAUGAGGAAA------ .........(((((((...((((....)))).)))))))..........(((((..(((....))).......(((((((.....))))))).)))))((....))......------ ( -20.00, z-score = -1.01, R) >droYak2.chr2R 4885786 112 + 21139217 AUUAUUAACGAUCAUUAUGAAGUUUUAACUUAAGUGGUCAAUUAACAUUUGCAUGACUGAAAUCGGAAUUGGAAAUUAGUGUAUGACUAAUUAAUGCACACAAAUGUGGAAA------ .........(((((((...((((....)))).))))))).....(((((((.....(((....)))............((((((.........)))))).))))))).....------ ( -21.80, z-score = -1.33, R) >droEre2.scaffold_4845 9461699 112 + 22589142 AUUAUUAACGAUCAUUAUGAAGUUUUAACUUAAGUGGUCAAUUAACAUUUGCAUGACUGAAAUCGGAAUUGGAAAUUAGUGUACGACUAAUUAAUGCACAGAAAUGAGGAAA------ .........(((((((...((((....)))).)))))))..........(((((..(((....))).......(((((((.....))))))).)))))((....))......------ ( -20.00, z-score = -1.04, R) >droAna3.scaffold_13266 6010906 112 + 19884421 AUUAUUAACGAUCAUUAUGAAGUUUUAACUUAAGUGGUCAAUUAACAUUUGCAUGACUGAAAUCGGAAUUGGAAAUUAGUGUAUAACUAAUUAAUGCACAAAAAAGAGCUAA------ .........(((((((...((((....)))).)))))))..........(((((..(((....))).......(((((((.....))))))).)))))..............------ ( -19.50, z-score = -1.23, R) >dp4.Unknown_singleton_1898 35970 109 + 80150 AUUAUUAACGAUCAUUAUGAAGUUUUAACUUAAGUGGUCAAUUAACAUUUGCAUGCCUGAAAUCGGAAUUGGAAAUUAGUGUAUAACUAAUUAAUGCACAACGAGAGAA--------- .........(((((((...((((....)))).)))))))..........(((((..(((....))).......(((((((.....))))))).)))))...(....)..--------- ( -19.50, z-score = -0.94, R) >droPer1.super_4 6549254 109 - 7162766 AUUAUUAACGAUCAUUAUGAAGUUUUAACUUAAGUGGUCAAUUAACAUUUGCAUGCCUGAAAUCGGAAUUGGAAAUUAGUGUAUAACUAAUUAAUGCACAACGAGAGAA--------- .........(((((((...((((....)))).)))))))..........(((((..(((....))).......(((((((.....))))))).)))))...(....)..--------- ( -19.50, z-score = -0.94, R) >droVir3.scaffold_12875 9942594 112 + 20611582 AUUAUUAACGAUCAUUAUGAAGUUUUAACUUAAGUGGUCAAUUAACAUUUGCAUGACUGAAAUCGGAAUUGGAAAUUAGUGUUUAACUAAUUUAUGCAUACAGAAAAAGAAA------ .........(((((((...((((....)))).)))))))..........(((((..(((....)))......((((((((.....)))))))))))))..............------ ( -20.50, z-score = -1.56, R) >droMoj3.scaffold_6496 16288286 112 - 26866924 AUUAUUAACGAUCAUUAUGAGGUUUUAACUUAAGUGGUCAAUUAACAUUUGCAUGACUGAAAUCGGAAUUGGAAAUUAGUGUUUAACUAAUUUAUGCGUACAGAAAAAGAAA------ .......(((((((((.((((.......)))))))))))...........((((..(((....)))......((((((((.....)))))))))))))).............------ ( -21.00, z-score = -1.43, R) >droGri2.scaffold_15245 14546018 118 + 18325388 AUUAUUAACGAUCAUUAUGAAGUUUUAACUUAAGUGGUCAAUUAACAUUUGCAUGACUGAAAUCGGAAUUGGAAAUUAGUGCUUAACUAAUUUAUGCACACAGUAAAUUAAAAAGAAA .(((((...(((((((...((((....)))).)))))))..........(((((..(((....)))......((((((((.....)))))))))))))...)))))............ ( -21.10, z-score = -1.46, R) >consensus AUUAUUAACGAUCAUUAUGAAGUUUUAACUUAAGUGGUCAAUUAACAUUUGCAUGACUGAAAUCGGAAUUGGAAAUUAGUGUAUAACUAAUUAAUGCACACAAAUGAAGAAA______ .........(((((((...((((....)))).)))))))..........(((((..(((....))).......(((((((.....))))))).))))).................... (-19.05 = -18.88 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:14 2011