| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,719,524 – 12,719,619 |
| Length | 95 |
| Max. P | 0.979046 |
| Location | 12,719,524 – 12,719,619 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 69.37 |
| Shannon entropy | 0.42243 |
| G+C content | 0.49295 |
| Mean single sequence MFE | -31.44 |
| Consensus MFE | -18.66 |
| Energy contribution | -19.33 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.979046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12719524 95 - 21146708 ---CCUGCUGUCUUGGCUAGUUGACUAUAAUCGUAAAUUUGUGGCUAUAGUUAGAUGUUGCAGGGGGCCAGGGCAGGGGGGCGGGGGUUUGGCAUCAU ---(((.(((((((((((..(((((((((..((........))..)))))))))...........))))))))))).)))((.(.....).))..... ( -32.92, z-score = -1.81, R) >droYak2.chr2R 4882502 91 + 21139217 CCUGCUGCUGCCUUGGCUAGUUGACUAUAAUCGUAAAUUUGUGGCUAUAG--AGUUGUUG--GCUGGUAUAGGGGUAGGGUAGGGGGUUCAUCAU--- ((((((.(((((((.((((((..(((((((........)))))(((....--))).))..--))))))...)))))))))))))...........--- ( -31.30, z-score = -2.13, R) >droEre2.scaffold_4845 9458525 75 + 22589142 ---CCUGCUGCCUUGGCUAGUUGACUAUAAUCGUAAAUUUGUGGCUAUAG--AGUUGUU------GGCCAGGGUAGGGGGCAUCAU------------ ---(((.(((((((((((((....(((((..((........))..)))))--.....))------))))))))))).)))......------------ ( -30.10, z-score = -3.10, R) >consensus ___CCUGCUGCCUUGGCUAGUUGACUAUAAUCGUAAAUUUGUGGCUAUAG__AGUUGUUG__G__GGCCAGGGCAGGGGGCAGGGGGUU___CAU___ ...(((.(((((((((((......((((((........))))))((......))...........))))))))))).))).................. (-18.66 = -19.33 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:13 2011