| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,707,732 – 12,707,785 |
| Length | 53 |
| Max. P | 0.561554 |
| Location | 12,707,732 – 12,707,785 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 87.17 |
| Shannon entropy | 0.23303 |
| G+C content | 0.37736 |
| Mean single sequence MFE | -7.54 |
| Consensus MFE | -6.66 |
| Energy contribution | -6.86 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12707732 53 - 21146708 UCGUGCCAAGUUCAAAAUUGUAUGCUUUGCACUUUCGGUUUUCAGUUUUCUCC ..((((.((((.((....))...)))).))))..................... ( -8.40, z-score = -1.54, R) >droSim1.chr2R 11441935 53 - 19596830 UCGUGCCAAGUUCAAAAUUGUAUGCUUUGCACUUUCGGUUUUCAGUUUUCUUC ..((((.((((.((....))...)))).))))..................... ( -8.40, z-score = -1.58, R) >droSec1.super_1 10212448 53 - 14215200 UCGUGCCAAGUUCAAAAUUGUAUGCUUUGCACUUUCGGUUUUCAGUUUUCUUC ..((((.((((.((....))...)))).))))..................... ( -8.40, z-score = -1.58, R) >droYak2.chr2R 4870643 53 + 21139217 UCGUGCCAAGUUCAAAAUUGUAUGCUUUGCACUUUCGGUUUUCAGUUUUCUCC ..((((.((((.((....))...)))).))))..................... ( -8.40, z-score = -1.54, R) >droMoj3.scaffold_6496 16268711 53 - 26866924 GGCUGCCAAGUUCAAAAUUAUAUGCUUUGCACUUUACUUUAUUCAUGUCAAAC ...(((.((((............)))).)))...................... ( -4.10, z-score = 0.83, R) >consensus UCGUGCCAAGUUCAAAAUUGUAUGCUUUGCACUUUCGGUUUUCAGUUUUCUCC ..((((.((((............)))).))))..................... ( -6.66 = -6.86 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:10 2011