| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,701,536 – 12,701,636 |
| Length | 100 |
| Max. P | 0.755865 |
| Location | 12,701,536 – 12,701,636 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 80.07 |
| Shannon entropy | 0.25712 |
| G+C content | 0.53391 |
| Mean single sequence MFE | -17.50 |
| Consensus MFE | -13.73 |
| Energy contribution | -13.73 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.755865 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12701536 100 + 21146708 ACCAACAACCACUAAACAGCCCAGCGCAAUCUAGAAAUCCAGCAAUCCCGCUGCUAGUGGAGCUCGGCAAUCACAAAUUGUUGCCCACAGCCCAGGCCCA .((.....((((((....((.....))............((((......)))).)))))).(((.((((((........))))))...)))...)).... ( -23.50, z-score = -1.43, R) >droSim1.chr2R 11435574 81 + 19596830 -----------CCCAACAACCCAGCU--AUCCAGAAAUCCAGCAAUCACGCAGCUAGUGGAGCUCCGCAAUCACAAAUUGUUGCCCACAGCCCA------ -----------...............--.............((......)).(((.((((.((...(((((.....))))).)))))))))...------ ( -15.20, z-score = -1.71, R) >droSec1.super_1 10206349 81 + 14215200 -----------CCCAACAACCCAGCU--AUCCAGAAAUCCAACAAUCCCGCAGCUAGUGGAGCUCCGCAAUCACAAAUUGUUGCCCACAGCCCA------ -----------...............--........................(((.((((.((...(((((.....))))).)))))))))...------ ( -13.80, z-score = -1.91, R) >consensus ___________CCCAACAACCCAGCU__AUCCAGAAAUCCAGCAAUCCCGCAGCUAGUGGAGCUCCGCAAUCACAAAUUGUUGCCCACAGCCCA______ ....................................................(((.((((.((...(((((.....))))).)))))))))......... (-13.73 = -13.73 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:09 2011