| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,652,958 – 12,653,050 |
| Length | 92 |
| Max. P | 0.938535 |
| Location | 12,652,958 – 12,653,050 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 88.84 |
| Shannon entropy | 0.19780 |
| G+C content | 0.45021 |
| Mean single sequence MFE | -29.45 |
| Consensus MFE | -24.77 |
| Energy contribution | -25.47 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.938535 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12652958 92 + 21146708 -------------UGCUGCAUUUCUUGGUCUGGCUGGUGUUCUUGUGUGUAAUUGAAUACUAGUACAAAGCUAUCCAACAUGGAUCGCUUGGAGGUAGUGGCGAA -------------.((..(((((((.......((((((((((............))))))))))...((((.((((.....)))).)))))))))).)..))... ( -30.30, z-score = -2.56, R) >droSim1.chr2R 11387611 93 + 19596830 ------------CUGCUGCAUUUCUUGGUCUGGCUGGUGUUCUUGUGUGUAAUUGAAUACUAGUACAAAGCUAUCCAACAUGGAUCGCUUGGAGGUGGUGGCGAA ------------.(((..(((((((.......((((((((((............))))))))))...((((.((((.....)))).)))))))))).)..))).. ( -30.40, z-score = -2.49, R) >droSec1.super_1 10158343 92 + 14215200 -------------UGCUGCAUUUCUUGGUCUGGCUGGUGUUCUUGUGUGUAAUUGAAUACUAGUACAAAGCUAUCCAACAUGGAUCGCUUGGAGGUGGUGGCGAA -------------.((..(((((((.......((((((((((............))))))))))...((((.((((.....)))).)))))))))).)..))... ( -30.30, z-score = -2.50, R) >droYak2.chr2R 4814175 93 - 21139217 ------------CUGCUGCAUUUCUUGGUCUGCCUGGUGUUCUUGUGUGUAAUUGAAUACUAGUACAAAGCUAUCCAACAUGGAUCGCUUGGAGGUGGUGGCAAA ------------.(((..(((((((........(((((((((............)))))))))....((((.((((.....)))).)))))))))).)..))).. ( -28.90, z-score = -1.95, R) >droEre2.scaffold_4845 9390361 92 - 22589142 -------------UGCUGCAUUUCUUGGUCUGGCUGGUGUUCUUGUGUGUAAUUGAAUACUAGUACGAAGCUAUCCAACAUGGAUCGCUUGGAGGUGGUGGCAAA -------------(((..(((((((.......((((((((((............))))))))))...((((.((((.....)))).)))))))))).)..))).. ( -31.10, z-score = -2.78, R) >droAna3.scaffold_13266 5945970 105 - 19884421 UUGGGUCUCCUGCUGGUUCAUUUCGUGUUCUUGUUGCAAUUCCUGUGUGUAAUUGAAUACUAGGAUAAAACUAUCCAACAUGGAUCGCUUGGAAGUGGUGGCGAA ....(((.((....(((((((...((((((..((((((.........)))))).))))))..(((((....)))))...)))))))(((....))))).)))... ( -25.70, z-score = -0.61, R) >consensus _____________UGCUGCAUUUCUUGGUCUGGCUGGUGUUCUUGUGUGUAAUUGAAUACUAGUACAAAGCUAUCCAACAUGGAUCGCUUGGAGGUGGUGGCGAA .............((((((((((((.......((((((((((..((.....)).))))))))))...((((.((((.....)))).)))))))))).)))))).. (-24.77 = -25.47 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:06 2011