| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,649,257 – 12,649,354 |
| Length | 97 |
| Max. P | 0.637619 |
| Location | 12,649,257 – 12,649,354 |
|---|---|
| Length | 97 |
| Sequences | 13 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 66.82 |
| Shannon entropy | 0.73628 |
| G+C content | 0.43021 |
| Mean single sequence MFE | -20.54 |
| Consensus MFE | -8.92 |
| Energy contribution | -9.08 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.72 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.637619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12649257 97 + 21146708 GGCAUCUUCAUUGACCACAGCCUUGCAAACAAUUUGCUUGGCACGAUCCGCAUAGCUAAACAAA---AUGGGUAUUAAGCAUUGGAUCAGAUAUUUAUUU----- ((((.......)).))...(((..((((.....))))..)))..((((((((((.(((......---.))).)))...))...)))))............----- ( -20.60, z-score = -0.75, R) >droSim1.chr2R 11383940 97 + 19596830 GGCAUCUUCAUUGACCACAGCCUUGCAAACAAUUUGCUUGGCACGAUCCGCAUAGCUAAACAAA---AUUGGUAUUAAGCAUUGGAUCUCAUAUUUAUUU----- ((((.......)).))...(((..((((.....))))..)))..(((((((.(((((((.....---.)))))..)).))...)))))............----- ( -20.70, z-score = -1.31, R) >droSec1.super_1 10154714 97 + 14215200 GGCAUCUUCAUUGACCACAGCCUUGCAAACAAUUUGCUUGGCACGAUCCGCAUAGCUAUACAAA---AUUGGUAUUAAGCCUUGGGUCUCAUAAUUAUUU----- ((((.......)).))...(((..((((.....))))..)))..((((((....(((((((...---....))))..)))..))))))............----- ( -21.60, z-score = -1.07, R) >droYak2.chr2R 4810464 94 - 21139217 GGCGUCUUCAUUGACCACAGCCUUGCAAACAAUUUGCUUGGCACGAUCCGCAUAGCUGUGAAAU---AUUGAUAUAAAACAUUAAUUUAC---UUUAAUU----- ((((((......)))....(((..((((.....))))..)))............)))(((((.(---(.((........)).)).)))))---.......----- ( -18.00, z-score = -1.14, R) >droEre2.scaffold_4845 9386660 97 - 22589142 UGCAUCUUCAUUGACCACAGCCUUGCACACGAUUUGCUUGGCACGAUCCGCAUAGCUGUGAAAU---AUUGGUUUAAACCAUUGGUUCUUCACCUCAACU----- ..........((((.((((((..(((....(((((((...))).)))).)))..))))))....---..((((....))))..(((.....)))))))..----- ( -20.70, z-score = -0.79, R) >droAna3.scaffold_13266 5941834 89 - 19884421 GGCGUCUUCGUUGACGACAGCCUUGCAAACAAUUUGCUUGGCACGAUCCGCAUAGCUAUUAAA----ACAUAUUUCAU-UAUACAUUUUCAUAU----------- ((((((......)))....(((..((((.....))))..)))............)))......----...........-...............----------- ( -16.30, z-score = -1.11, R) >dp4.chr3 716778 99 - 19779522 GGCAUCCUCGUUGACCACAGCCUUGCACACGAUCUGCUUGGCCCGAUCCGCAUACCUAUGGGUUUC-AUUAUUGACAU-----CAUCACGUGGCUCUACUUAUAU .........((.((((((.(((..(((.......)))..)))..((..(.(((....))).)..))-...........-----......)))).)).))...... ( -20.70, z-score = -0.06, R) >droPer1.super_37 694814 99 - 760358 GGCAUCCUCGUUGACCACAGCCUUGCACACGAUCUGCUUGGCCCGAUCCGCAUACCUAUGGGUUUU-AUUAUUGACAU-----CAUCACGGGGCUCUACUUAUAU .....(((((((((.....(((..(((.......)))..))).((((......(((....)))...-...))))...)-----))..))))))............ ( -19.80, z-score = 0.53, R) >droWil1.scaffold_180569 836211 96 - 1405142 GGCAUCUUCAUUAACCACAGCCUUGCACACAAUUUGCUUGGCUCGAUCCGCAUAGCUG-GAAAU---GGAGAUUUUCGUCAUGAAGUCCUCUCAUUCAUU----- ((((((((((((......((((..(((.......)))..))))...(((((...)).)-)))))---))))))....)))(((((.........))))).----- ( -22.60, z-score = -0.96, R) >droMoj3.scaffold_6496 22558279 92 + 26866924 GGCAUCCUCAUUGACGACAGCCUUGCAAACAAUUUGCUUGGCACGAUCCGCAUAACUGAAGGA----AUUCAUGACAU----GCAUUA-CAAGUACGGCUU---- (((.......(((......(((..((((.....))))..))).......((((..(((((...----.)))).)..))----))....-))).....))).---- ( -18.70, z-score = -0.07, R) >droVir3.scaffold_12875 17940277 93 - 20611582 GGCAUCCUCAUUGACCACAGCCUUGCACACAAUUUGCUUGGCACGAUCCGCAUAGCUAAAGGA----AUUCAACUCAA----GGAUUAGUCAAUGCAGCUU---- ......(((((((((....(((..(((.......)))..)))..(((((((...))...((..----......))...----))))).))))))).))...---- ( -21.30, z-score = -0.69, R) >droGri2.scaffold_15112 3502463 101 + 5172618 CGCAUCCUCGUUGACAACAGCCUUGCAGACAAUUUGCUUGGCACGAUCCGCAUAACUACAGAAUGCAAAUCAACUCAACUCAGUUAUAGCAACAACUGAUU---- .........(((((.....(((..(((((...)))))..)))..(((..((((.........))))..)))...)))))((((((........))))))..---- ( -23.70, z-score = -2.46, R) >anoGam1.chr3L 37024574 105 - 41284009 CGCGUCCUCGUUGACGACAGCUUUGCAGACAAUCUGCUUCGCACGAUCGGCAUAUCUGAUAAUAAAAGGAAGAAAGAAAAAAGCGAUUGUAAAUCGUAUUCGCCA .(((....((...((((..(((((((((.....))))(((.....(((((.....))))).......))).........)))))..))))....))....))).. ( -22.30, z-score = 0.49, R) >consensus GGCAUCUUCAUUGACCACAGCCUUGCAAACAAUUUGCUUGGCACGAUCCGCAUAGCUAUAAAAU___AUUGAUAUCAA_CAUGCAUUAUCAAAUUCAAUU_____ .((.((......)).....(((..(((.......)))..))).......))...................................................... ( -8.92 = -9.08 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:05 2011