| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,648,064 – 12,648,156 |
| Length | 92 |
| Max. P | 0.727992 |
| Location | 12,648,064 – 12,648,156 |
|---|---|
| Length | 92 |
| Sequences | 13 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 63.28 |
| Shannon entropy | 0.76588 |
| G+C content | 0.51099 |
| Mean single sequence MFE | -25.22 |
| Consensus MFE | -11.63 |
| Energy contribution | -11.48 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.57 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.727992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12648064 92 - 21146708 CCACCACGGAGAUGGCUGUGGAUCAGCUGCAGGCCAGCGAGAAACUUAUUGCAGGUGAGUGGGAAU-AUCUAAGACCCCUUUACCAAACGUUA------------------ .....(((....((((((..(.....)..)).))))((((........)))).((((((.(((...-........))).))))))...)))..------------------ ( -25.00, z-score = -0.31, R) >droSim1.chr2R 11382769 79 - 19596830 CCACAACGGAGAUGGCUGUGGAUCAGCUGCAGGCCAGCGAGAAACUCAUUGCAGGUGAGU-GGAAU-A-AUCUAACUCCCUU----------------------------- ((.....))...((((((..(.....)..)).))))((((........))))(((.((((-(((..-.-.))).))))))).----------------------------- ( -21.60, z-score = -0.11, R) >droSec1.super_1 10153511 110 - 14215200 CCACAACGGAGAUGGCUGUGGAUCAGCUGCAGGCCAGCGAGAAACUCAUUGCAGGUGAGUGGGAAU-AUAUAUGACUCCUUUAGCAAAUCUUUAAAAAAUCUAUCUAAAUC .......((((((.((((.((((((((((.....)))).....((((((.....))))))......-.....))).)))..))))..)))))).................. ( -23.70, z-score = 0.26, R) >droYak2.chr2R 4809268 93 + 21139217 CCACAACGGAAAUGGCUGUGGAUCAGCUGCAGGCCAGCGAGAAACUCAUUGCAGGUAAGUGGGGAUAAUCUAUGAAGCUUUUAACAAACGUGA------------------ .(((...(..((.((((((((((...((.((.(((.((((........)))).)))...)).))...))))))..)))).))..)....))).------------------ ( -20.80, z-score = 0.50, R) >droEre2.scaffold_4845 9385449 93 + 22589142 CCACAACGGAGAUGGCUGUGGAUCAGCUGCAGGCCAGCGAGAAACUCAUUGCAGGUGAGUGUGGAUCAUCUAACGCUCUUUUACCAAACGUGA------------------ .(((........((((((..(.....)..)).))))((((........)))).(((((((((((.....)).))))))....)))....))).------------------ ( -25.80, z-score = 0.18, R) >droAna3.scaffold_13266 5940663 76 + 19884421 CCACCACGGAAAUGGCAGUGGAUCAGCUCCAAGCCAGCGAGAAACUAAUAGCAGGUGGGU-UUUUUAAACUAUAUCU---------------------------------- (((((.......((((..((((.....)))).))))((............)).)))))..-................---------------------------------- ( -19.80, z-score = -1.33, R) >dp4.chr3 715431 96 + 19779522 CCACCACGGAAAUGGCCGUGGAUCAGCUGCAGGCCAGCGAGAAGCUCAUCGCAGGUGAGUAGUCAUCCAAUCGAUUCCACAGGACGGCAGGUCUGA--------------- ...((((((......))))))........((((((........((((((.....)))))).(((.(((.............))).))).)))))).--------------- ( -33.22, z-score = -0.99, R) >droPer1.super_37 693466 96 + 760358 CCACCACGGAAAUGGCCGUGGAUCAGCUGCAGGCCAGCGAGAAGCUCAUCGCAGGUGAGUAGUCAUCCAAACGAUUCCACAGGACGGCAAGACUGA--------------- ...((((((......)))))).((((((((...((.((((........))))..(((.(.((((........)))))))).))...)).)).))))--------------- ( -31.40, z-score = -1.14, R) >droWil1.scaffold_180569 835060 88 + 1405142 CGACUACAGAGAUGGCUGUGGAUCAGCUGCAGGCCAGUGAGAAGCUCAUUGCUGGUAAGCUAAACCUAAACUCUCUGAUUCGAAUCAA----------------------- (((...((((((.(((((.....)))))((..(((((..(........)..)))))..))...........))))))..)))......----------------------- ( -28.60, z-score = -1.91, R) >droMoj3.scaffold_6496 22557078 91 - 26866924 CUACCACAGAAAUGGCUGUGGAUCAGCUGCAGGCCAGCGAGAAGCUUAUUGCAGGUAAGAUCC-GGCAGAGGGAGGUCCUAGACCCACUCGC------------------- ...((((((......))))((((((.((((((...(((.....)))..)))))).)..)))))-))..(((.(.((((...))))).)))..------------------- ( -30.50, z-score = -0.68, R) >droVir3.scaffold_12875 17938991 91 + 20611582 CCACCACGGAGAUGGCCGUGGAUCAAUUGCAGGCCAGCGAGAAGCUGAUUGCAGGUAAGCUCG-CCUAGAGGCAAUCCAUAGAUGCAGUUGC------------------- ...((((((......))))))..((((((((....(((.....)))((((((((((......)-)))....))))))......)))))))).------------------- ( -31.90, z-score = -1.54, R) >droGri2.scaffold_15112 3500906 87 - 5172618 CCACCACCGAAAUGGCCGUGGAUCAGCUGCAGGCCAGCGAGAAGCUCAUUGCAGGUAAGCAAA--UCAAACGCUGAGAUUGAAUCUUAA---------------------- ((((..((.....))..)))).((((((((..(((.((((........)))).)))..)))..--......))))).............---------------------- ( -22.40, z-score = -0.15, R) >triCas2.ChLG8 11258130 71 + 15773733 --------GAGGAAGCCGUCGAUCAAUUGCAAGCCAGCGAGAAACUCAUCGCCGGUAAUUCACCCUUUAAUCGAAUUAA-------------------------------- --------(((...((((.((((...((((......)))).......)))).))))..)))..................-------------------------------- ( -13.20, z-score = -0.17, R) >consensus CCACCACGGAGAUGGCUGUGGAUCAGCUGCAGGCCAGCGAGAAACUCAUUGCAGGUGAGUGGGAAUCAAAUAGAACUCAUUGAACAAA_______________________ ............((((((..(.....)..).)))))((((........))))........................................................... (-11.63 = -11.48 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:04 2011