| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,622,056 – 12,622,159 |
| Length | 103 |
| Max. P | 0.722023 |
| Location | 12,622,056 – 12,622,159 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 91.04 |
| Shannon entropy | 0.16130 |
| G+C content | 0.38685 |
| Mean single sequence MFE | -23.79 |
| Consensus MFE | -18.60 |
| Energy contribution | -18.44 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.722023 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12622056 103 + 21146708 CUCAAGUUUUGUUUCCGUUUAUUGGUGUGAGUGAGCGGAAGUUUUCAUGUGUGUCA--GUGUGUGUACUUAGCUGGUAUUUGUGUUAGUUUAGAGAAUUUAACUU (((........((((((((((((......))))))))))))....((((.((..((--((..(....)...))))..)).))))........))).......... ( -23.10, z-score = -2.12, R) >droSim1.chr2R 11356958 103 + 19596830 CUCAAGUUUUGUUUCCGUUCAUUGGUGUGAGUGAGCGGAAGUUUUCAUGUGUGCGA--GUGUGUGUACUUAGCUGGUGUUUGUGUUAGUUUAGAGAAUUUAACUU ...(((((....(((((((((((......)))))))))))((((((..(((..((.--...))..)))..((((..(......)..))))..))))))..))))) ( -24.80, z-score = -2.00, R) >droSec1.super_1 10127851 102 + 14215200 CUCAAGUUUUGUUUCCGUUCAUUGGUGUGAGUGAGCGGAAGUUUUCAUGUGUGCGA--GU-UGUGUACUUAGCUGGUGUUUGUGUUAGUUUAGAGAAUUUAACUU (((........((((((((((((......))))))))))))....((((.(..(.(--((-((......))))).)..).))))........))).......... ( -26.30, z-score = -2.62, R) >droYak2.chr2R 4781818 105 - 21139217 CUCAAGUUUUGUUUCCGUUCAUUGGUGUGAGUGAGCGGAAGUUUUCAUGUGCGUCAGUGUGUGUGUGCUUAACUGGUGUUUGUGUUGGUUUAGAGAAUUUAACUU (((........((((((((((((......))))))))))))....((((.((..((((..((....))...))))..)).))))........))).......... ( -27.60, z-score = -2.73, R) >droEre2.scaffold_4845 9358445 93 - 22589142 CUCAAGUUUUGUUUCGGUUCAUUGGUGUGAGUGAGCGAAAGUUUUC------------GUGUGUGUACUUAACUGGUGUUUGUGUUAGUUUAGAGAAUUUAACUU ...(((((...((((....(((..((.((((((.(((((....)))------------)).....))))))))..)))..............))))....))))) ( -17.17, z-score = -0.58, R) >consensus CUCAAGUUUUGUUUCCGUUCAUUGGUGUGAGUGAGCGGAAGUUUUCAUGUGUGCCA__GUGUGUGUACUUAGCUGGUGUUUGUGUUAGUUUAGAGAAUUUAACUU ...(((((((.((((((((((((......))))))))))))..........................((.((((..(......)..)))).)))))))))..... (-18.60 = -18.44 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:01 2011