| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,612,687 – 12,612,855 |
| Length | 168 |
| Max. P | 0.724947 |
| Location | 12,612,687 – 12,612,855 |
|---|---|
| Length | 168 |
| Sequences | 4 |
| Columns | 168 |
| Reading direction | forward |
| Mean pairwise identity | 91.32 |
| Shannon entropy | 0.14268 |
| G+C content | 0.42791 |
| Mean single sequence MFE | -49.50 |
| Consensus MFE | -42.58 |
| Energy contribution | -42.45 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12612687 168 + 21146708 UUACAGAGAAAACUAUAAACUUUGUGAAAAGCGAAGCAUUCUCUCAGUGUACCCAAAGACCAGACUUUGGCUUACACAUGUACGAGUGUGUGUAGUUUUUUUUUGGGGCCUGCAGCAUCUUUUGAGUGGAAUGCGGCAGUCAACUGCCCUGAAAACUGAGACGACUCA ...(((.((((((((((..((((((.....))))))(((((...(((((((.((((((......))))))..))))).))...)))))..))))))))))(((..((((((((.((((((.......)).)))).))))......))))..))).))).......... ( -51.90, z-score = -1.98, R) >droYak2.chr2R 4772389 166 - 21139217 AAACAGUUAUGAGUAAAAUCUUUAUAAAAAGAGCCACAUUUUUUCAGUGUACCCAGAGACCAGACUUUGGCUUACACAUGUACGAGUGUGUGUA--GUUUUUUUGGGGCCUGCAGCAUCUUUUGAGUGGAAUGCGGCAGUCAACUGCCCUGAAAACUGAGACGACUCA .........(((((....((((..........(((((((((...(((((((.((((((......))))))..))))).))...))))))).))(--((((((..(((((((((.((((((.......)).)))).))))......))))))))))))))))..))))) ( -48.80, z-score = -1.71, R) >droSec1.super_1 10115301 166 + 14215200 UUGCAAAUAAAACUAUAAACUUUGUAAAGAGUGAAGCAUUCUCUCAGUGUACCCAAAGACCAGACUUUGGCUUACACAUGUACGAGUGUGUGUA--UUUUUUUUGGGGCCUGCAGCAUCUUUUGAGUGGAAUGCGGCAGUCAACUGCCCUGAAAACUGAGACGACUCA (((((((.............))))))).((((...((((((((((((....((((((((((((...))))..((((((..(....)..))))))--...))))))))((.....)).....))))).)))))))(((((....)))))...............)))). ( -47.72, z-score = -1.44, R) >droSim1.chr2R 11347806 166 + 19596830 UUACAGAUAAAACUUGAAACUUUGUAAACUGAGAAGCAUUCUCUCAGUGUACCCAAAGACCAGACUUUGGCUUACACAUGUACGAGUGUGUGUA--UUUUUUUUGGGGCCUGCAGCAUCUUUUGAGUGGAAUGCGGCAGUCAACUGCCCUGAAAACUGAGGCGACUCA .((((.((...(((((.......(((.(((((((.......))))))).)))((((((......))))))............))))))).))))--...((((..((((((((.((((((.......)).)))).))))......))))..))))..(((....))). ( -49.60, z-score = -1.58, R) >consensus UUACAGAUAAAACUAUAAACUUUGUAAAAAGAGAAGCAUUCUCUCAGUGUACCCAAAGACCAGACUUUGGCUUACACAUGUACGAGUGUGUGUA__UUUUUUUUGGGGCCUGCAGCAUCUUUUGAGUGGAAUGCGGCAGUCAACUGCCCUGAAAACUGAGACGACUCA .((((..............((((....))))....((((((...(((((((.((((((......))))))..))))).))...)))))).)))).....((((..((((((((.((((((.......)).)))).))))......))))..))))..(((....))). (-42.58 = -42.45 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:58 2011