| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,610,745 – 12,610,817 |
| Length | 72 |
| Max. P | 0.614815 |
| Location | 12,610,745 – 12,610,817 |
|---|---|
| Length | 72 |
| Sequences | 7 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 83.75 |
| Shannon entropy | 0.29506 |
| G+C content | 0.53483 |
| Mean single sequence MFE | -27.83 |
| Consensus MFE | -12.27 |
| Energy contribution | -13.07 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12610745 72 + 21146708 UCAGCUUCAACCUGAGGCAUUUGCAUUGGCAUUUGCGGCAAUGUGCGGCUC---AGGUGAGCUAGAGAGCUUGAC (((((((..((((((((((..(((....)))..))).((.....))..)))---))))))))).))......... ( -26.40, z-score = -1.39, R) >droPer1.super_37 650978 66 - 760358 ---------CCCUGAGGCAUUUGCAUUGGCAUUUGCCGCAAUGUUUAGCUUCAGAGGCGACACCGAGAGCUUGAC ---------..(((((((....((((((((....)))..)))))...)))))))((((..........))))... ( -20.00, z-score = -1.42, R) >dp4.chr3 671126 66 - 19779522 ---------CACUGAGGCAUUUGCAUUGGCAUUUGCCGCAAUGUUUAGCUUUAGAGGCGACACCGAGAGCUUGAC ---------...((.((((..(((....)))..)))).))..(((.((((((...((.....)).)))))).))) ( -21.00, z-score = -2.44, R) >droEre2.scaffold_4845 9346963 70 - 22589142 UCAACUC--ACCUGAGGCAUUUGCAUUGGCAUUUGCGGCAAUGUGCGGCUC---AGGUGAGCUCGAUAGCUUGAC ....(((--((((((((((..(((....)))..))).((.....))..)))---))))))).............. ( -27.80, z-score = -2.69, R) >droYak2.chr2R 4770504 70 - 21139217 UCAGCUC--ACCUGAGGCAUUUGCAUUGGCAUUUGCGGCAAUGUGCGGCUC---AGGUGAGCUCGAGAGCUUGAC (((((((--((((((((((..(((....)))..))).((.....))..)))---))))))))).))......... ( -33.40, z-score = -3.58, R) >droSec1.super_1 10113368 70 + 14215200 UCAGCUC--ACCUGAGGCAUUUGCAUUGGCAUUUGCGGCAAUGUGCGGCUC---AGGUGAGCUCAAGAGCUUGAC ...((((--((((((((((..(((....)))..))).((.....))..)))---))))))))((((....)))). ( -32.80, z-score = -3.53, R) >droSim1.chr2R 11345875 70 + 19596830 UCAGCUC--ACCUGAGGCAUUUGCAUUGGCAUUUGCGGCAAUGUGCGGCUC---AGGUGAGCUCGAGAGCUUGAC (((((((--((((((((((..(((....)))..))).((.....))..)))---))))))))).))......... ( -33.40, z-score = -3.58, R) >consensus UCAGCUC__ACCUGAGGCAUUUGCAUUGGCAUUUGCGGCAAUGUGCGGCUC___AGGUGAGCUCGAGAGCUUGAC ..........(((..(((....((((((((....))..))))))...)))....)))((((((....)))))).. (-12.27 = -13.07 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:57 2011