| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,602,864 – 12,602,941 |
| Length | 77 |
| Max. P | 0.565735 |
| Location | 12,602,864 – 12,602,941 |
|---|---|
| Length | 77 |
| Sequences | 7 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 85.21 |
| Shannon entropy | 0.29511 |
| G+C content | 0.42398 |
| Mean single sequence MFE | -19.62 |
| Consensus MFE | -12.95 |
| Energy contribution | -13.11 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565735 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12602864 77 - 21146708 UUUGUGUUCUGCUUUUCAGGGG-CG--GACUGCAAGUAGUUCACUUGGGCUACUGCAUAAUUCAUUCG-GUUUUAAUGACA .......(((((((.....)))-))--)).((((.(((((((....)))))))))))....(((((..-.....))))).. ( -20.30, z-score = -1.75, R) >droSim1.chr2R 11337579 77 - 19596830 UUUGUGUUCUGCUUUUCAGGGG-CG--GACUGCAAGUAGUUCACUUGGGCUACUGCAUAAUUCAUUCG-GUUUUAAUGACA .......(((((((.....)))-))--)).((((.(((((((....)))))))))))....(((((..-.....))))).. ( -20.30, z-score = -1.75, R) >droSec1.super_1 10105606 77 - 14215200 UUUGUGUUCUGCUUUUCAGGGG-CG--GACUGCAAGUAGUUCACUUGGGCUACUGCAUAAUUCAUUCG-GUUUUAAUGACA .......(((((((.....)))-))--)).((((.(((((((....)))))))))))....(((((..-.....))))).. ( -20.30, z-score = -1.75, R) >droYak2.chr2R 4762524 78 + 21139217 UUUCUGUUCUGUUUUUUAAGGGCCG--GACUGCAAGUAGUUCACUUGGGCUACUGCAUAAUUCAUUCG-GUUUUAAUGACA ..........(((..((((((.(((--((.((((.(((((((....))))))))))).......))))-))))))).))). ( -19.40, z-score = -1.87, R) >droEre2.scaffold_4845 9339019 78 + 22589142 UUUCUGUUCUGUUUUUAAAGGGCCG--AACUGCAAGUAGCUCACUUGGGCUACUGCAUAAUUCAUUCG-GUUUUAAUGACA ..........(((.(((((..((((--((.((((.(((((((....))))))))))).......))))-))))))).))). ( -23.20, z-score = -3.25, R) >droAna3.scaffold_13266 5893311 70 + 19884421 -------UUUGUUGGCCAAGGA-CG--GACUGCAAGUAGUUCACUUGGGCUACUGCAUAAUUCAUUCG-GCUUUAAUGACA -------..((((((((..(((-.(--((.((((.(((((((....)))))))))))...))).))))-))).....)))) ( -18.90, z-score = -1.65, R) >droVir3.scaffold_12875 17884986 81 + 20611582 UCCGUGUUCCAUCUACCAUGUAGUGUCCACUGCAACUAGUUCACUUGGGCUACUGCAUAAUUCAUGCGCCUUUUAAUGACA ...((((..........((((((((((((..((.....)).....))))).))))))).......))))............ ( -14.93, z-score = -0.14, R) >consensus UUUGUGUUCUGUUUUUCAAGGG_CG__GACUGCAAGUAGUUCACUUGGGCUACUGCAUAAUUCAUUCG_GUUUUAAUGACA ..............................((((.(((((((....)))))))))))....(((((........))))).. (-12.95 = -13.11 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:56 2011