| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,601,157 – 12,601,219 |
| Length | 62 |
| Max. P | 0.669925 |
| Location | 12,601,157 – 12,601,219 |
|---|---|
| Length | 62 |
| Sequences | 10 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 72.78 |
| Shannon entropy | 0.57412 |
| G+C content | 0.44844 |
| Mean single sequence MFE | -14.51 |
| Consensus MFE | -5.30 |
| Energy contribution | -5.54 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.669925 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12601157 62 + 21146708 AAAAUGUUUUGUGAGCCGGGGGGCAGCGAAACAUGAGAAAUGGCAACAGAUUUGGG----GACACA ...(((((((((..(((....))).)))))))))......((....))....((..----..)).. ( -17.90, z-score = -3.13, R) >droSim1.chr2R 11335892 60 + 19596830 AAAAUGUUUUGUGAGCCGGGG--CAGCGAAACAUGAGAAAUGGCAACAGAUUUGGG----GACACA ...(((((((((..((....)--).)))))))))......((....))....((..----..)).. ( -15.90, z-score = -2.33, R) >droSec1.super_1 10103939 60 + 14215200 AAAAUGUUUUGUGAGCCGGGG--CAGCGAAACAUGAGAAAUGGCAACAGAUUUGGG----GACACA ...(((((((((..((....)--).)))))))))......((....))....((..----..)).. ( -15.90, z-score = -2.33, R) >droYak2.chr2R 4760877 60 - 21139217 AAAAUGUUUUGUGAGCCGGGC--AACCGAAACAUGAGAAAUGGCAACAGAUUUGGG----AACACA .........((((..((((..--..))........(((..((....))..))).))----..)))) ( -13.40, z-score = -1.21, R) >droEre2.scaffold_4845 9337443 59 - 22589142 AAAAUGUUUUGUGAGCCGGG---CACCGAAACAUGAGAAAUGGCAACAGAUUUGGG----GACACA ...((((((((.(.((...)---).)))))))))......((....))....((..----..)).. ( -11.30, z-score = -0.13, R) >droAna3.scaffold_13266 5891874 62 - 19884421 AAAAUGUUUGCUGCGCCGC----CCAUGAAACAUGAGAAAUGGCAACAGAUUUUGGCCAAAACACA ....(((((..((.(((..----.((((...))))((((.((....))..)))))))))))))).. ( -11.30, z-score = 0.23, R) >dp4.chr3 660960 56 - 19779522 GAAAUGUUUUGUGCGACAGG----CAUGAAACAUGAGAAAUGGCAACAGAUUUAGC------CACA ...((((((..(((.....)----))..))))))......((((..........))------)).. ( -15.80, z-score = -3.10, R) >droPer1.super_37 640781 56 - 760358 GAAAUGUUUUGUGCGACAGG----CAUGAAACAUGAGAAAUGGCAACAGAUUUAGC------CACA ...((((((..(((.....)----))..))))))......((((..........))------)).. ( -15.80, z-score = -3.10, R) >droWil1.scaffold_180569 641232 62 + 1405142 UAAGCACUACAUGGCCCAAAUGUUUGUGUGGCAUGAGAAAUGGAAACAGAUUUUGCC----AUACA ........((((.......)))).(((((((((.((....((....))..)).))))----))))) ( -17.30, z-score = -1.95, R) >droGri2.scaffold_15112 3440939 62 + 5172618 CAGAGGGCAGAGGGAUCAAGGAUGCGGGUAGAAUGAGAAAUGGCAGCAGAUUUUUA----GCCGCA .....(((..(((((((.....(((..((...((.....)).)).)))))))))).----)))... ( -10.50, z-score = -0.39, R) >consensus AAAAUGUUUUGUGAGCCGGG___CAGCGAAACAUGAGAAAUGGCAACAGAUUUGGG____GACACA ...(((((((((.............))))))))).(((..((....))..)))............. ( -5.30 = -5.54 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:55 2011