| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,594,154 – 12,594,249 |
| Length | 95 |
| Max. P | 0.928988 |
| Location | 12,594,154 – 12,594,249 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.83 |
| Shannon entropy | 0.36272 |
| G+C content | 0.61763 |
| Mean single sequence MFE | -38.35 |
| Consensus MFE | -31.19 |
| Energy contribution | -31.67 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12594154 95 - 21146708 GGCUUGGGGCUCAAGUGGCGUGUCCGUGUCAUUUACCUGGCAGCCACUCAAGUGGCAAGAGGACAGGUGCACGGGGUACGGGGCACGGGGCACGU------------ .(((((.....))))).(((((((((((((.....((((((((((((....)))))..(....)...))).))))......))))).))))))))------------ ( -40.30, z-score = -1.68, R) >droSim1.chr2R 11328872 88 - 19596830 GGCUUGGGGCUCAAGUGGCGUGUCCAUGUCAUUUACCUGGCAGCCACUCAAGUGGCAAGUGGACAGGUGCACGGGGUACGGGGCUCGU------------------- (((((.(..(((..(((((.(((((((((((......)))).(((((....)))))..))))))).)).))).)))..).)))))...------------------- ( -39.10, z-score = -2.33, R) >droSec1.super_1 10096917 88 - 14215200 GGCUUGGGGCUCAAGUGGCGUGUCCAUGUCAUUUACCUGGCAGCCACUCAAGUGGCAAGUGGACAGGUGCACGGGGUACGGGGCUCGU------------------- (((((.(..(((..(((((.(((((((((((......)))).(((((....)))))..))))))).)).))).)))..).)))))...------------------- ( -39.10, z-score = -2.33, R) >droYak2.chr2R 4753828 107 + 21139217 GGCUUGGGGCUCAAGUGGCGUGUCCAUGUCAUUUACCUGGCAGCCACUCAAGUGGCAAGAGGACAGGUGCACGGGGUACGGAGUUCGGGGUGCGGGGAACGGGACUC (((((.(..(((..(((((.(((((.(((((......)))))(((((....)))))....))))).)).))).)))..).)))))..((((.(.(....).).)))) ( -42.80, z-score = -1.80, R) >droEre2.scaffold_4845 9330519 102 + 22589142 GGCUUGGAGCUCAAGUGGCGUGUCCAUGUCAUUUACCUGGCAGCCACUCAUGUGGCAAGAGGACAGGUGCACGGGGCACGGGGUACGCGGUACUGGGCAUGU----- .(((..(.((((..(((((.(((((.(((((......)))))(((((....)))))....))))).)).))).)))).(((....).))...)..)))....----- ( -41.20, z-score = -1.09, R) >droAna3.scaffold_13266 5885868 83 + 19884421 GGCUCGGGGCUCAAGUGGCGUGUCCAUGUCAUUUACCUGGCAGCCACUCAAGUGGUCACGGGAAAGCAGAGAGGGGUAGUGGC------------------------ ..(((...(((.(((((((((....))))))))).((((...(((((....)))))..))))..)))...)))..........------------------------ ( -27.60, z-score = -0.24, R) >consensus GGCUUGGGGCUCAAGUGGCGUGUCCAUGUCAUUUACCUGGCAGCCACUCAAGUGGCAAGAGGACAGGUGCACGGGGUACGGGGCUCGG___________________ .((((.(.((((..(((((.(((((.(((((......)))))(((((....)))))....))))).)).))).)))).).))))....................... (-31.19 = -31.67 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:55 2011