| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,060,085 – 3,060,203 |
| Length | 118 |
| Max. P | 0.640459 |
| Location | 3,060,085 – 3,060,203 |
|---|---|
| Length | 118 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 64.11 |
| Shannon entropy | 0.75712 |
| G+C content | 0.46636 |
| Mean single sequence MFE | -28.31 |
| Consensus MFE | -11.85 |
| Energy contribution | -11.35 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.640459 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3060085 118 + 23011544 AGAAUCUUUUCGACGGCGUCGACAUGGUCAACGAUGAUCCCCGCCGUUGGGAGCGUGGUAAGAUCAACUACCAAUGGACUUCUCAUAAGGAAUAGCAUUCUUUUGAGUAGUUACAAUC ......((..((((((((..(((((.(....).))).))..))))))))..))..(((((........)))))...((((.((((.(((((......))))).)))).))))...... ( -36.80, z-score = -2.24, R) >droSim1.chr2L 3003391 116 + 22036055 AGAACCUUUUCGACGGCGUCGACAUGGUCAACGAUGACCCCCGCCGUUGGGAGCGUGGUAAGAUCAACUACCAAUGCACUUCUCAUGAAGAAUACCAUUCUU--GAGUAGUGACUAAC .......(..((((((((.......(((((....)))))..))))))))..)((((((((........)))).))))(((.((((.(((........))).)--))).)))....... ( -36.30, z-score = -2.49, R) >droSec1.super_5 1217325 118 + 5866729 AGAACCUUUUCGACGGCGUCGACAUGGUCAACGAUGAUCCCCGCCGUUGGGAGCGUGGUAAGAUCAACUACCAAUGCACUUCUCAUGAAGAAUAGCAUUCUUUUGAGUAGUGACUAAC .......(..((((((((..(((((.(....).))).))..))))))))..)((((((((........)))).))))(((.((((.(((((((...))))))))))).)))....... ( -39.10, z-score = -3.00, R) >droYak2.chr2L 3056086 118 + 22324452 AGAACCUUUUCGAUGGCGUUGACAUGGUCAACGAUGAUCCCCGCCGCUGGGAGCGUGGUAAGAUCAACUACCAAAGCAGUUCUCAUAAAGAAUAGCUUUCUUUUCAGUAGUUACUAAC ....((........))(((((((...)))))))..((((.((((.((.....))))))...))))((((((.(((((.(((((.....))))).))))).......))))))...... ( -29.40, z-score = -0.73, R) >droEre2.scaffold_4929 3107827 118 + 26641161 AGAACCUAUUCGACGGCGUCGACAUGGUCAACGAUGAUCCCCGCCGCUGGGAGCGUGGUAAGAUCAACUACCAAAGCAGUUCUCAUAAGGAAUAGCUUCGUUGUCAGUACUUACUAAC .(((.(((((((.(((((..(((((.(....).))).))..))))))(((((((.(((((........))))).....)))))))....)))))).)))................... ( -35.30, z-score = -1.69, R) >droAna3.scaffold_12916 6585050 95 - 16180835 AGAACCUCUUCAAUGGCGUCGACAUGGUCAACGAUGAUCCUCGUCGCUGGGAGCGCGGUAAGUUCGCUUA--AAAGCAUCUAUCCUCCUGA-UCUUAC-------------------- (((..(((((....((((.(((...(((((....))))).))).))))))))).((..((((....))))--...)).)))..........-......-------------------- ( -21.50, z-score = 0.57, R) >dp4.chr4_group3 4518781 98 - 11692001 AGAAUCUCUUCAAUGGCGUGGACAUGGUCAACGAUGAUCCCAGACGCUGGGAGCGCGGUAAGU----AGU---CUUUCUUCCCAGCCCUAGAUCUCUCAGCUAAA------------- .............(((((.((((((.(....).))).))))(((..(((((.((..((.(((.----...---....))).)).)))))))...)))..))))..------------- ( -24.90, z-score = 0.61, R) >droPer1.super_1 1662237 98 - 10282868 AGAAUCUCUUCAAUGGCGUGGACAUGGUCAACGAUGAUCCCAGACGCUGGGAGCGCGGUAAGU----AGU---CUUUCUUCCCAGCCCUAGAUCUCUCAGCUAAA------------- .............(((((.((((((.(....).))).))))(((..(((((.((..((.(((.----...---....))).)).)))))))...)))..))))..------------- ( -24.90, z-score = 0.61, R) >droWil1.scaffold_181132 399636 103 + 1035393 AAAAUCUCUACAAUGGCGUUGAUAUGGUCAAUGAUGAUCCCAGACGUUGGGAGCGCGGUAAGUCUAAGCA---ACAUAUCCAGAAAUUCGCAUUUGUUUUACUGAA------------ .........((((..(((......(((...(((....((((((...))))))((..((.....))..)).---.)))..)))......)))..)))).........------------ ( -19.10, z-score = 1.06, R) >droVir3.scaffold_12963 5731042 96 - 20206255 AGAAUCUGUUCGAUGGCGUCGAUUUGGUUAAUGAUGAUCCCAGACGCUGGGAGCGCGGUAGGUGUACACA---UUAUAUUUUCUAUUUAGCAACGUUUA------------------- ..((((...(((((...)))))...)))).((((((.((((((...))))))((((.....))))...))---))))......................------------------- ( -20.60, z-score = 0.70, R) >droMoj3.scaffold_6500 16920779 100 - 32352404 AGAAUCUGUUCGAUGGCGUCGAUAUGGUCACCGAUGAUCCCAGACGCUGGGAGCGCGGUAAGUGUGGAUA---ACUUAAUUGCUAUUGAAAUCCUAUUAAAUU--------------- ........((((((((((((.((((....((((.((.((((((...)))))).))))))..)))).))).---........))))))))).............--------------- ( -28.50, z-score = -1.45, R) >droGri2.scaffold_15252 2021571 95 + 17193109 AGAAUCUGUUCGAGGGCGUCGACAUGGUCACCGAUGAACCCAUACGCUGGGAGCGCGGUAAGUUUGAAUA---GGUAAUUAAUCAAUUAGUAUAUUUA-------------------- ...((((((((((((.(((....))).))((((.((..((((.....))))..))))))....)))))))---)))......................-------------------- ( -23.30, z-score = -0.49, R) >consensus AGAAUCUCUUCGAUGGCGUCGACAUGGUCAACGAUGAUCCCAGACGCUGGGAGCGCGGUAAGUUCAAAUA___AUGCAUUUCUCAUUAAGAAUAUCUUUCUUU_______________ ............((.((((...(((.(....).))).((((.......)))))))).))........................................................... (-11.85 = -11.35 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:56 2011