| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,590,720 – 12,590,830 |
| Length | 110 |
| Max. P | 0.679671 |
| Location | 12,590,720 – 12,590,830 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 122 |
| Reading direction | reverse |
| Mean pairwise identity | 79.47 |
| Shannon entropy | 0.37079 |
| G+C content | 0.43503 |
| Mean single sequence MFE | -34.85 |
| Consensus MFE | -19.88 |
| Energy contribution | -20.97 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12590720 110 - 21146708 CGUUUUACAACUUCGCAUGUGGAUC--AACUAAGAAUGGGGCUAUGGUCUGGAAAUAGAUCAUUCU---------UUCGAGGGCCAUAACUUUAAGUUA-CUCCCCAUGGGGGGCUAUUGAA ..........((((.((((.(((..--((((.....(((((.((((((((.(((..(((....)))---------)))..)))))))).))))))))).-.))).)))).))))........ ( -29.70, z-score = -0.83, R) >droSim1.chr2R 11325366 110 - 19596830 CGUUUUACAACUUCGCAUGUGGAUC--AACUAAGAAUGGGGUUAUGGUCUGGAAAUAGAUCAUUCU---------UUCGAGGGCCAUAACUUUAAGUUG-CUCCCCAUGGGGGGCUAUUGAA ..........((((.((((.(((.(--((((.....((((((((((((((.(((..(((....)))---------)))..)))))))))))))))))))-.))).)))).))))........ ( -37.40, z-score = -3.04, R) >droSec1.super_1 10093417 110 - 14215200 CGUUUUACAACUUUGCAUGUGGAUC--AACUAAGAAUGGGGUUAUGGUCUGGAAAUAGAUCAUUCU---------UUCGAGGGCCAUAACUUUAAGUUG-CUCCCCAUGGGGGGCUAUUGAA ..........((((.((((.(((.(--((((.....((((((((((((((.(((..(((....)))---------)))..)))))))))))))))))))-.))).)))).))))........ ( -35.70, z-score = -2.55, R) >droYak2.chr2R 4750319 112 + 21139217 CUUUUUACAGCUUCGCAUGUGGUUCCAGAUCAAGAAUGGGGUUAUGGUCUGGAAAUAGAUCAUUCU---------UCUGAGGGCCAUAACUUUAGGUUG-CUCCCGAUGGGGGGCUAUUGUA ..............(((.((((((((..(((.....((((((((((((((......(((....)))---------.....))))))))))))))((...-...)))))..))))))))))). ( -34.50, z-score = -1.08, R) >droEre2.scaffold_4845 9327122 112 + 22589142 UAUUUUACAGCUUCGCAUGUGGAUCCAGAUCGAGAAUGGGGUUAUGGUCUGGAAAUAGAUCAUUCU---------UUUAAGGGCCAUAACUUUAAGUUG-CUCCCGAUGGGGGGCUAUUGUA .....(((((.((((.((.((....)).))))))..((((((((((((((..(((.(((....)))---------)))..))))))))))))))....(-(((((....))))))..))))) ( -37.20, z-score = -2.51, R) >droAna3.scaffold_13266 5882690 122 + 19884421 CUUUUUAUGGCUUUGAGAGAGAAUUCUUUUGGAUGAGACUGGUCUAGACCAGAAAUAGAUCAUUCUUGGCCCCCAUGUGAGGACUAUAACUCGAAAACGAUUCCCAAUGGGGGGCUAUUGUU ...........((..((((......))))..)).((((.(((((((.........))))))).))))(((((((...((.(((.......(((....))).)))))...)))))))...... ( -34.60, z-score = -0.98, R) >consensus CGUUUUACAACUUCGCAUGUGGAUC__AACUAAGAAUGGGGUUAUGGUCUGGAAAUAGAUCAUUCU_________UUCGAGGGCCAUAACUUUAAGUUG_CUCCCCAUGGGGGGCUAUUGAA ...((((((........)))))).............((((((((((((((.(((..(((....))).........)))..))))))))))))))......(((((....)))))........ (-19.88 = -20.97 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:54 2011