| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,573,086 – 12,573,155 |
| Length | 69 |
| Max. P | 0.985642 |
| Location | 12,573,086 – 12,573,155 |
|---|---|
| Length | 69 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 76.28 |
| Shannon entropy | 0.42944 |
| G+C content | 0.47333 |
| Mean single sequence MFE | -20.28 |
| Consensus MFE | -15.10 |
| Energy contribution | -15.50 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.985642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12573086 69 - 21146708 ACUCCUGUACGCCCCUGACUUUUUAUCUUCCUCUUUAAC--GCUGAUGGUAUUGGUUGAGGGGCUUGUGAA ..........((((((((((...((((.((..(......--)..)).))))..)))).))))))....... ( -17.70, z-score = -1.87, R) >droSim1.chr2R 11306565 71 - 19596830 ACACCACUACGCCCCUGACUUUUGAUCAUCCUCCUUAACACGCUGAUGGUAUUGGUUAAGGGGCUUGUGGA ...((((...((((((((((....((((((..(........)..))))))...)))).))))))..)))). ( -26.10, z-score = -3.86, R) >droSec1.super_1 10070935 64 - 14215200 ACGCCACUACGCCCCUGACUUUUUAUCAUUCUCCUUAACAAGCUGAUGGUAUUGGUUAAGGGGC------- ..........((((((((((...(((((((..(........)..)))))))..)))).))))))------- ( -18.70, z-score = -2.41, R) >droYak2.chr2R 4732644 68 + 21139217 -AGUAACUACGCCCCUGCCUUUUUGUCUUCCUCUUAAAU--AGUGAGGGUGUUGGUUAAGGGGUUUUUGGA -.....(((.(((((((((....(..((((..((.....--)).))))..)..)))..))))))...))). ( -18.20, z-score = -0.68, R) >droEre2.scaffold_4845 9309572 68 + 22589142 ACCCCACUACGCCCCUGACUUUU-AUCUCCCUCUUCAGU--GAUGAUGGUGUUGGUUAAGGGGUCUUUGGA ...(((....((((((((((..(-(((..(.((......--)).)..))))..)))).))))))...))). ( -20.70, z-score = -1.24, R) >consensus ACGCCACUACGCCCCUGACUUUUUAUCUUCCUCUUUAAC__GCUGAUGGUAUUGGUUAAGGGGCUUGUGGA ..........((((((((((...(((((((..............)))))))..)))).))))))....... (-15.10 = -15.50 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:53 2011