| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,505,330 – 12,505,432 |
| Length | 102 |
| Max. P | 0.583766 |
| Location | 12,505,330 – 12,505,432 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.29 |
| Shannon entropy | 0.40921 |
| G+C content | 0.48239 |
| Mean single sequence MFE | -25.77 |
| Consensus MFE | -13.15 |
| Energy contribution | -13.54 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.583766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12505330 102 - 21146708 --UAUGGCGACCCGCAUGAUCAAGUGCCACUUAAGUGUGUUUCACACGUCACAAUAUCUCCGCAGGUCCAAAGUAGCCGCCCUGCGUCUACAGCCCCCUAAACC----------- --...(((((((.((..(((...(((........(((((...)))))..)))...)))...)).))))....((((.(((...))).)))).))).........----------- ( -26.00, z-score = -2.22, R) >droSim1.chr2R_random 2517312 99 - 2996586 --UAUGGCGACCCGCAUGAUCAAGUGCCACUUAAGUGUGUUUCACACGUCACAAUAUCUCCGCAGGUCCAAAAUA---GCCCUGUGU-UGUGAAAUCAAAGAUCU---------- --....(((...)))..((((.............(((((...))))).((((((......((((((.(.......---).)))))))-))))).......)))).---------- ( -22.40, z-score = -1.00, R) >droSec1.super_1 10003304 99 - 14215200 --UAUGGCGACCCGCAUGAUCAAGUGCCACUUAAGUGUGUUUCACACGUCACAAUAUCUCCCCAGGUCCAAAAUA---GCCCUGUGU-UGUGAAAUCAAAGAUCU---------- --....(((...)))..((((.............(((((...))))).((((((((......((((.(.......---).)))))))-))))).......)))).---------- ( -20.90, z-score = -1.01, R) >droYak2.chr2R 4662639 97 + 21139217 --UAUGGCGACCCGCAUGAUCAAGUGCCACUUAAGAGUGUUUCACACGUCAUAAUAUCUCCGCAGGUCCAAAGUU---GCCCUGCGU-UAUGAAAUCAAAGAA------------ --(((((((....((((......))))((((....)))).......))))))).......((((((..((....)---).)))))).-...............------------ ( -22.90, z-score = -1.37, R) >droEre2.scaffold_4845 9234527 109 + 22589142 --UAUGGCGACCCGCAUGAUCAAGUGCCACUUAAGAGUGUUUCACACGUCAUAAUAUCUCCGCAGGUCCAAAGUU---GACCUGCGU-UAUGAAAUCAAAGAUCUACAGCAUAAC --(((((((...)))..((((..(((.((((....))))...)))...((((((......((((((((.......---)))))))))-))))).......)))).....)))).. ( -28.90, z-score = -2.59, R) >droAna3.scaffold_13266 5798637 96 + 19884421 GCUACGGCGACCCGCCUGAUCAAGUGGCACUUAAGUGUGU--CACACCUCACGUUUCCUCUCGUGGCGUCAAG-----AUCUAGUAGCGACACAGCCUAUGAC------------ (((((((((...)))).((((..(((((((......))))--)))((.(((((........))))).))...)-----)))..)))))...............------------ ( -33.50, z-score = -2.44, R) >consensus __UAUGGCGACCCGCAUGAUCAAGUGCCACUUAAGUGUGUUUCACACGUCACAAUAUCUCCGCAGGUCCAAAGUA___GCCCUGCGU_UAUGAAAUCAAAGAUC___________ ....(((((....((((......))))(((......))).......))))).........((((((..............))))))............................. (-13.15 = -13.54 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:46 2011