| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,500,449 – 12,500,526 |
| Length | 77 |
| Max. P | 0.500000 |
| Location | 12,500,449 – 12,500,526 |
|---|---|
| Length | 77 |
| Sequences | 6 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 59.36 |
| Shannon entropy | 0.79576 |
| G+C content | 0.34307 |
| Mean single sequence MFE | -11.38 |
| Consensus MFE | -4.97 |
| Energy contribution | -5.33 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.35 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 12500449 77 - 21146708 CGUGACUGGUAAUUUAUAAUCUUGUCGGUUUUUGAACUUAUGGAGUUCGAGAAACCAUGACCCAUAAAUCAAUUAAC ...(((.(((........)))..)))(((((((((((((...)))))).)))))))..................... ( -15.10, z-score = -0.91, R) >droAna3.scaffold_13266 5794286 60 + 19884421 ---------------GUGAUUUGGCACCAGUUU--CUUAAUCGAAUUCGAGCACUAAAUACUAAUUAAUCGAAUUAC ---------------(((((((((....(((..--.....(((....))).........)))......))))))))) ( -7.79, z-score = -0.77, R) >droEre2.scaffold_4845 9229702 71 + 22589142 ------CGUGACUUUAUGAUGUUGUCCAUUUCUGAAAUCAUGGGGUUCAAGAACCCUUGGCUUAUACAUCAAUUUGA ------..........((((((.(.(((....((....)).((((((....))))))))))....))))))...... ( -14.60, z-score = -0.43, R) >droYak2.chr2R 4657719 58 + 21139217 CGUGACUGUUUAUUCAUACUUUUAUUCGAUUCUGAAAUCAUGGAAUUCAAGAGCCCAU------------------- .((((........)))).(((((....((((((........)))))).))))).....------------------- ( -5.00, z-score = 1.23, R) >droSec1.super_1 9998487 77 - 14215200 CGUGACUGGUAUUUUAUAAUCUUGUCGUUUUUUGAACUUAUGGAGUUCAAGAACCCAUGACCUAUAAAUCAAUUUCA .(.((.((((...(((((.....((((((((((((((((...)))))))))))...))))).))))))))).)).). ( -12.90, z-score = -0.62, R) >droSim1.chr2R 11237622 77 - 19596830 CGUGACUGGUAUUUUAUAAUCUUGUCGUUUUUUGAACUUAUGGAGUUCAAGAACCCAUGACCUAUAAAUCAAUUUCA .(.((.((((...(((((.....((((((((((((((((...)))))))))))...))))).))))))))).)).). ( -12.90, z-score = -0.62, R) >consensus CGUGACUGGUAAUUUAUAAUCUUGUCCGUUUUUGAACUUAUGGAGUUCAAGAACCCAUGACCUAUAAAUCAAUUUAA .............................((((((((((...))))))))))......................... ( -4.97 = -5.33 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:44 2011