| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,458,395 – 12,458,510 |
| Length | 115 |
| Max. P | 0.637178 |
| Location | 12,458,395 – 12,458,510 |
|---|---|
| Length | 115 |
| Sequences | 14 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 77.43 |
| Shannon entropy | 0.53307 |
| G+C content | 0.47857 |
| Mean single sequence MFE | -31.54 |
| Consensus MFE | -18.72 |
| Energy contribution | -18.64 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.637178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12458395 115 + 21146708 --GGGCGUUUUGGGGGCUGGCAA-CUCACUUGGGCAUGUCCAGAAGCUGGUCCAAGUCGACACCGCGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUCAGAUUUUCAUCGACUUG --((((((((..((....(....-)...))..)).))))))...........((((((((.(((......)))(((..(((.(((((.........))))))))..))).)))))))) ( -34.50, z-score = -0.03, R) >droGri2.scaffold_15245 5074954 104 + 18325388 ------------GUGGAUU-UUA-CUCACUUGGGCAUAUCCAACAGCUGGUCCAAGUCCACACCGCGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUAAGAGUUUCAUCAACUUG ------------(((((..-...-....(((((((..............)))))))))))).....(((.((((((.((((((((((......)))))..))))).)))))).))).. ( -28.34, z-score = -1.61, R) >droVir3.scaffold_12875 19012234 113 + 20611582 ----CAGCAUCCGAGUUUAACUA-CUCACUUGGGCAUAUCCAACAGCUGAUCCAAGUCCACACCACGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUAAGAGUUUCAUCAACUUG ----((((....((((......)-)))..(((((....)))))..))))...(((((....((....)).((((((.((((((((((......)))))..))))).)))))).))))) ( -29.20, z-score = -2.09, R) >droWil1.scaffold_180700 934257 118 + 6630534 UGGGUGAAAAAUUCGGGAGGCACACUCACUUGGGCAUAUCCAAAAGCUGAUCCAAGUCGACACCGCGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUCAGAGUUUCAUCAGCCUG ..((((..........(((.....)))(((((((((...........)).)))))))...))))..(((.((((((.((((.(((((.........))))))))).)))))).))).. ( -33.60, z-score = -0.64, R) >droPer1.super_2 5163779 113 - 9036312 ---AUCCAUUUGCAGUGGAAUA--CUCACUUGGGCAUGUCCAACAGUUGGUCCAAGUCCACACCGCGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUAAGAGUGUCAUCGACUUG ---.(((((.....)))))(((--(((((((((((.((.....))....))))))))...((((......))))........(((((......)))))....)))))).......... ( -31.60, z-score = -0.80, R) >dp4.chr3 16093277 113 - 19779522 ---AUCCAUUUGCAGUGGAAUA--CUCACUUGGGCAUGUCCAACAGUUGGUCCAAGUCCACACCGCGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUAAGAGUGUCAUCGACUUG ---.(((((.....)))))(((--(((((((((((.((.....))....))))))))...((((......))))........(((((......)))))....)))))).......... ( -31.60, z-score = -0.80, R) >droAna3.scaffold_13266 15827007 111 + 19884421 -------GCAUAUUGUUAAUCAAACUCACUUGGGCAUGUCCAGAAGCUGGUCCAAGUCCACACCACGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUCAGAUUUUCAUCGACUUG -------.......................(((((.((.((((...))))..)).)))))......(((.((((((..(((.(((((.........))))))))..)))))).))).. ( -25.10, z-score = -0.31, R) >droEre2.scaffold_4845 9186754 115 - 22589142 --GGGGGAUGUGGGGCUAUCCAA-CUCACUUGGGCAUGUCCAGAAGCUGGUCCAAGUCGACACCACGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUCAGAUUUUCAUCGACUUG --.(((((((......)))))..-.((((((((((..((......))..)))))))).))..))..(((.((((((..(((.(((((.........))))))))..)))))).))).. ( -32.40, z-score = 0.35, R) >droYak2.chr2R 4612962 115 - 21139217 --GGGUGAUGUGGGGCUGCACAA-CUCACUUGGGCAUGUCCAGAAGCUGGUCCAAGUCGACACCACGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUCAGAUUUUCAUCGACUUG --.((((.((((......)))).-.((((((((((..((......))..)))))))).))))))..(((.((((((..(((.(((((.........))))))))..)))))).))).. ( -35.10, z-score = -0.44, R) >droSec1.super_1 9956545 114 + 14215200 --UGGGGAUGUGGAGCUG-GCAA-CUCACUUGGGCAUGUCCAGAAGCUGGUCCAAGUCGACACCGCGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUCAGACUUUCAUCGACUUG --...((((.(((..(((-(((.-(((....)))..)).))))...)))))))(((((((((((......))))......(((((((.........))))))).......))))))). ( -32.60, z-score = 0.71, R) >droSim1.chr2R 11192517 114 + 19596830 --GGACGAUGUGGGGCUG-GCAA-CUCACUUGGGCAUGUCCAGAAGCUGGUCCAAGUCGACACCGCGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUCAGACUUUCAUCGACUUG --((((...(((((....-....-)))))(((((....)))))......))))(((((((((((......))))......(((((((.........))))))).......))))))). ( -35.70, z-score = -0.31, R) >triCas2.ChLG2 8224474 101 - 12900155 ----------------UUGGGGUUUUUACUUGGGCAAAUCUAGCAGUUGGUCCAAGUCCACGCCCCGGUAGGUGAAUUUUUUGAAGGUCCUCUUCUUCUUAACUUGUUCGUCAGCCU- ----------------..(((((....((((((((.(((......))).))))))))....)))))(((.(..((((.((..(((((......)))))..))...))))..).))).- ( -34.10, z-score = -2.90, R) >droMoj3.scaffold_6496 12696627 112 + 26866924 -----UGAUGCCGAAUACUGUUA-CUUACUUGGGCAUAUCCAACAGCUGGUCCAAGUCCACACCACGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUAAGAGUUUCAUCAACUUG -----...(((((.....(((..-...((((((((..............))))))))..)))...)))))((((((.((((((((((......)))))..))))).))))))...... ( -27.94, z-score = -0.94, R) >apiMel3.GroupUn 353246328 114 - 399230636 ----UAUUUUAUGAAAUACAAAAUCUUACUUUGGCAUAUCAAGGAGUUGAUCGAGAUCAACUCCUCGAAAGGUGAACUUUCGGAAAGUCCUCUUUUUCUUUUGAGUUUCUUCUGCCUG ----............................(((...((.((((((((((....)))))))))).)).(((.((((((..((((((......))))))...))))))..)))))).. ( -29.80, z-score = -2.44, R) >consensus _____CGAUGUGGAGUUGAGCAA_CUCACUUGGGCAUGUCCAGAAGCUGGUCCAAGUCCACACCGCGGUAGGUGAACUUCUUGAAGGUACGCUUCUUCUUCAGAGUUUCAUCGACUUG ...........................(((((((((...........)).))))))).........(((.((((((..(((.(((((......)))))...)))..)))))).))).. (-18.72 = -18.64 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:43 2011