| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,059,399 – 3,059,535 |
| Length | 136 |
| Max. P | 0.700770 |
| Location | 3,059,399 – 3,059,535 |
|---|---|
| Length | 136 |
| Sequences | 6 |
| Columns | 151 |
| Reading direction | forward |
| Mean pairwise identity | 69.87 |
| Shannon entropy | 0.56347 |
| G+C content | 0.49677 |
| Mean single sequence MFE | -43.37 |
| Consensus MFE | -20.00 |
| Energy contribution | -22.56 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3059399 136 + 23011544 AACAUUCAAACAAAAAACC-----UAAUCGCCCGGCAUCCCGCUCCAGAGAGCGAAAGCUCUGCGCUUGCGGGUGGUAAAGAGCUUUUGC---------UUAACAGCGAGGGGUGGCAGACAAGUUG-CAGAUGCGGCAGAAUGAUCACAA ..(((((.........(((-----(..((((...((..(((((....((((((....))))).)....)))))..))...((((....))---------))....)))).)))).........((((-(....))))).)))))....... ( -46.80, z-score = -1.58, R) >droEre2.scaffold_4929 3107121 145 + 26641161 AACACUCAAACAAAAAAUAA----UAAUCGCCCG-CAUCCCGCUCCAGAGAGCGAAAGCUCUGCGCUUGCGGUUGAUAGAGAGCUUUUGCCGUGCUAACUUAACAUCGAGGGGUGGCAGACAAGUUA-CAGAUGCGGCGGAAUUAUCACAA ....................----...(((((.(-((((((((....((((((....))))).)....)))).........((((((((((..(((..(((......))).)))))))))..)))).-..))))))))))........... ( -42.70, z-score = -1.16, R) >droYak2.chr2L 3055385 150 + 22324452 AACAUUCAAACAGAAAAAAAAAGCGAAUGGCCCGGCAUCCCGCUCCAGAGAGCGAAAGCUCUGCGGUUGCGGGUGGCAGCGAGCUUUUGCCGUGUUAACUUAACAGCGAGGGGUGGCAGACAAGUUA-CAGCUGCGGCAGAAUGAUCACAA ..(((((...((...............))(((...((.(((((.((..(((((....)))))..))..)))))))(((((...(((((((..(((((...))))))))))))(((((......))))-).)))))))).)))))....... ( -54.56, z-score = -1.89, R) >droSec1.super_5 1216639 136 + 5866729 AACAUUAAAACAAAAAAAC-----CAAUUGCCCGGCAUCCCGCUCCAGAGAGCGAAAGCUCUGCGCUUGCGGGUGGCGAAGAGCUUUUGC---------UUAACAGCGAGGGGUGGCAGACAAGUUG-CAGAUUUGGCAGAAUGAUCACAG ..((((....((((...((-----(..((((.((.((.(((((....((((((....))))).)....))))))).))..((((....))---------))....))))..))).((((.....)))-)...))))....))))....... ( -46.20, z-score = -1.72, R) >droSim1.chr2L 3002705 136 + 22036055 AACAUUCAAACAAAAAAAC-----UAAUCGCCCGGCAUCCCGCUCCAGAGAGCGAAAGCUCUGCGCUUGCGGGUGGCGAAGAGCUUUUGC---------UUAACAGCGAGGGGUGGCAGAAAAGUUG-CAGAUGUGGCAGAAUGAUCACAG ..(((((..........((-----(..((((.((.((.(((((....((((((....))))).)....))))))).))..((((....))---------))....))))..))).........((..-(....)..)).)))))....... ( -49.00, z-score = -2.16, R) >dp4.chr4_group3 4518078 122 - 11692001 ---------------AGCCUUCAAAAAUUCACUCUUAGGGCGUCCCAUACUCCAUAAGCUAAGCC------GGCGGCAAAGAGACUUUCUA--------UACACGCCAAAUAGAUGUACAUACUUGAACAAGUAGCUCUUGAUUUCCUCAG ---------------.(((((...............)))))...........((..(((((....------((((......((.....)).--------....)))).......(((.((....)).)))..)))))..)).......... ( -20.96, z-score = 0.42, R) >consensus AACAUUCAAACAAAAAAAC_____UAAUCGCCCGGCAUCCCGCUCCAGAGAGCGAAAGCUCUGCGCUUGCGGGUGGCAAAGAGCUUUUGC_________UUAACAGCGAGGGGUGGCAGACAAGUUA_CAGAUGCGGCAGAAUGAUCACAA ..(((((.......................(((..((.(((((....((((((....))))).)....)))))))((((((...))))))...................)))((.(((..............))).)).)))))....... (-20.00 = -22.56 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:54 2011