| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,450,676 – 12,450,769 |
| Length | 93 |
| Max. P | 0.983458 |
| Location | 12,450,676 – 12,450,769 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 84.74 |
| Shannon entropy | 0.32072 |
| G+C content | 0.38742 |
| Mean single sequence MFE | -17.10 |
| Consensus MFE | -16.33 |
| Energy contribution | -16.33 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.983458 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12450676 93 - 21146708 UCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUCUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCCUGCUUACCCUCUGUCACAC---------------- .....................(((((((((.....((((((..(((....)))..))))))...)))))))))....................---------------- ( -16.50, z-score = -1.40, R) >droSim1.chr2R 11184605 93 - 19596830 UCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUCUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCCUGCUUACCCUCUGUCACUC---------------- .....................(((((((((.....((((((..(((....)))..))))))...)))))))))....................---------------- ( -16.50, z-score = -1.62, R) >droSec1.super_1 9948737 93 - 14215200 UCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUCUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCCUGCUUACCCUCUGUCACUC---------------- .....................(((((((((.....((((((..(((....)))..))))))...)))))))))....................---------------- ( -16.50, z-score = -1.62, R) >droYak2.chr2R 4604332 93 + 21139217 UCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUCUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCCUGCUUACCCUCUGUCACUC---------------- .....................(((((((((.....((((((..(((....)))..))))))...)))))))))....................---------------- ( -16.50, z-score = -1.62, R) >droEre2.scaffold_4845 9178221 93 + 22589142 UCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUCUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCCUGCUUACCCUCUGUCACUC---------------- .....................(((((((((.....((((((..(((....)))..))))))...)))))))))....................---------------- ( -16.50, z-score = -1.62, R) >droAna3.scaffold_13266 15819067 104 - 19884421 UCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUCUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCCUUCUUACCCCCUUUUUAUUCGCUUUCACCC----- .....................(((((((((.....((((((..(((....)))..))))))...)))))))))...............................----- ( -16.50, z-score = -2.16, R) >dp4.chr3 16085682 93 + 19779522 UCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCCUCCUUACCCUCUCUCACUC---------------- .....................(((((((((.....((((((..(((....)))..))))))...)))))))))....................---------------- ( -16.50, z-score = -2.80, R) >droPer1.super_2 5156193 93 + 9036312 UCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCCUCCUUACCCUCUCUCAGUC---------------- .....................(((((((((.....((((((..(((....)))..))))))...)))))))))....................---------------- ( -16.50, z-score = -2.41, R) >droWil1.scaffold_180700 924009 108 - 6630534 UCAUUCAAAACAAUUUC-AAAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCUCCUGCUUCAGUACUGAAUAAGCCUCUCUCUCCUUC ..(((((..((.....(-(.((((((((((.....((((((..(((....)))..))))))...))))))))))..)).....))..)))))................. ( -20.60, z-score = -1.89, R) >droMoj3.scaffold_6496 12685297 95 - 26866924 UCAUUCAAAACAAUUUC-AAAGCUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGGCUCCUUUACCUCCUUUGCCGCAA------------- .................-...(((((((((.....((((((..(((....)))..))))))...)))))))(((...............)))))..------------- ( -18.56, z-score = -1.40, R) >droVir3.scaffold_12875 19003348 85 - 20611582 UCAUUCAAAACAAUUUC-AAAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCCUCCUUUUGACUC----------------------- ...............((-((((((((((((.....((((((..(((....)))..))))))...))))))))).....)))))...----------------------- ( -17.50, z-score = -2.25, R) >droGri2.scaffold_15245 5065891 95 - 18325388 UCAUUCAAAACAAUUUC-AAAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCCUCCUUUACCUCCUUUGCCGCAA------------- .................-...(((((((((.....((((((..(((....)))..))))))...))))))))).......................------------- ( -16.50, z-score = -1.34, R) >consensus UCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUCUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCCUCCUUACCCUCUGUCACUC________________ .....................(((((((((.....((((((..(((....)))..))))))...))))))))).................................... (-16.33 = -16.33 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:42 2011