| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,432,789 – 12,432,885 |
| Length | 96 |
| Max. P | 0.692148 |
| Location | 12,432,789 – 12,432,885 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 93.47 |
| Shannon entropy | 0.13019 |
| G+C content | 0.33740 |
| Mean single sequence MFE | -19.54 |
| Consensus MFE | -16.52 |
| Energy contribution | -16.53 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.692148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12432789 96 - 21146708 -UUCGUGCUACAAAGCA--ACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUCCU------------------- -....((((....))))--((((((((((((.(((.......((((.....))))((((....))))......))).))))).....))))))).....------------------- ( -19.80, z-score = -1.86, R) >droEre2.scaffold_4845 9160556 96 + 22589142 -UUCGUGCUACAAAGCA--ACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUCCU------------------- -....((((....))))--((((((((((((.(((.......((((.....))))((((....))))......))).))))).....))))))).....------------------- ( -19.80, z-score = -1.86, R) >droYak2.chr2R 4586257 96 + 21139217 -UUCGUGCUACAAAGCA--ACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUCCU------------------- -....((((....))))--((((((((((((.(((.......((((.....))))((((....))))......))).))))).....))))))).....------------------- ( -19.80, z-score = -1.86, R) >droSim1.chr2R 11166632 96 - 19596830 -UUCGUGCUACAAAGCA--ACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUCCU------------------- -....((((....))))--((((((((((((.(((.......((((.....))))((((....))))......))).))))).....))))))).....------------------- ( -19.80, z-score = -1.86, R) >droSec1.super_1 9931037 96 - 14215200 -UUCGUGCUACAAAGCA--ACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUCCU------------------- -....((((....))))--((((((((((((.(((.......((((.....))))((((....))))......))).))))).....))))))).....------------------- ( -19.80, z-score = -1.86, R) >dp4.chr3 16068273 96 + 19779522 -UUCGUGCUACAAAGCA--ACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUCCC------------------- -....((((....))))--((((((((((((.(((.......((((.....))))((((....))))......))).))))).....))))))).....------------------- ( -19.80, z-score = -1.95, R) >droPer1.super_2 5138813 96 + 9036312 -UUCGUGCUACAAAGCA--ACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUCCC------------------- -....((((....))))--((((((((((((.(((.......((((.....))))((((....))))......))).))))).....))))))).....------------------- ( -19.80, z-score = -1.95, R) >droAna3.scaffold_13266 15801550 96 - 19884421 -UUCGCGCUACAAAGCA--ACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUCCU------------------- -.....(((....)))(--((((((((((((.(((.......((((.....))))((((....))))......))).))))).....))))))))....------------------- ( -20.10, z-score = -1.84, R) >droWil1.scaffold_180700 892484 118 - 6630534 UUUUGCUCUACAAAGCAACACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUUUCCCUUCCACUCUCCACUUUC ..(((((......))))).((((((((((((.(((.......((((.....))))((((....))))......))).))))).....)))))))........................ ( -20.30, z-score = -2.11, R) >droVir3.scaffold_12875 18977672 98 - 20611582 -CUCGGUCUACAAAGCA--ACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUUUGCU----------------- -............((((--((((((((((((.(((.......((((.....))))((((....))))......))).))))).....)))))))...))))----------------- ( -20.10, z-score = -1.56, R) >droMoj3.scaffold_6496 12656956 96 - 26866924 -UUCGGUCUACAAAGCA--ACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUCCU------------------- -...............(--((((((((((((.(((.......((((.....))))((((....))))......))).))))).....))))))))....------------------- ( -17.70, z-score = -1.05, R) >droGri2.scaffold_15245 5041343 96 - 18325388 -UUCGGUCUACAAAGCA--ACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUCCU------------------- -...............(--((((((((((((.(((.......((((.....))))((((....))))......))).))))).....))))))))....------------------- ( -17.70, z-score = -1.05, R) >consensus _UUCGUGCUACAAAGCA__ACAAAUCGAGUUUGCGAAUAAAUGAAAUUACUUUUCGGUCUAAUGACCAUCAUCUGCUGAUUUUAUUAGAUUUGUUUCCU___________________ ...................((((((((((((.(((.......((((.....))))((((....))))......))).))))).....)))))))........................ (-16.52 = -16.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:37 2011