| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,415,419 – 12,415,469 |
| Length | 50 |
| Max. P | 0.899900 |
| Location | 12,415,419 – 12,415,469 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.32000 |
| Mean single sequence MFE | -6.10 |
| Consensus MFE | -6.10 |
| Energy contribution | -6.10 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.55 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.899900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12415419 50 + 21146708 UCCUUUGUGCAUCUGCAACUACUUUAUGUAUUCUACAUAUGUAUAUACUC .....(((((((.((....(((.....))).....)).)))))))..... ( -6.10, z-score = -1.55, R) >droSec1.super_1 9919022 50 + 14215200 UCCUUUGUGCAUCUGCAACUACUUUAUGUAUUCUACAUAUGUAUAUACUC .....(((((((.((....(((.....))).....)).)))))))..... ( -6.10, z-score = -1.55, R) >droSim1.chr2R 11154515 50 + 19596830 UCCUUUGUGCAUCUGCAACUACUUUAUGUAUUCUACAUAUGUAUAUACUC .....(((((((.((....(((.....))).....)).)))))))..... ( -6.10, z-score = -1.55, R) >consensus UCCUUUGUGCAUCUGCAACUACUUUAUGUAUUCUACAUAUGUAUAUACUC .....(((((((.((....(((.....))).....)).)))))))..... ( -6.10 = -6.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:36 2011