| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,399,529 – 12,399,679 |
| Length | 150 |
| Max. P | 0.878375 |
| Location | 12,399,529 – 12,399,679 |
|---|---|
| Length | 150 |
| Sequences | 5 |
| Columns | 173 |
| Reading direction | reverse |
| Mean pairwise identity | 61.04 |
| Shannon entropy | 0.67830 |
| G+C content | 0.39877 |
| Mean single sequence MFE | -24.51 |
| Consensus MFE | -11.30 |
| Energy contribution | -11.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12399529 150 - 21146708 ACUUUAAAGUGUGGCCACACCUACACUUUGACCC-----GC--CCCCACACCGCUCGACUUAACGAAUGCACAAAGAGAAAAACUAAAUCAAAAUAU---AUUACAAUACUGCUGGCAAUCAAGUUACUAAACUCUGGGCUUCUAAUGCAAAAAUUUCAU------------- ...(((((((((((......)))))))))))...-----((--((.......(((((......)))..))....((((...................---....((....)).((((......)))).....))))))))....................------------- ( -23.80, z-score = -0.82, R) >droEre2.scaffold_4845 9132441 173 + 22589142 ACUUUAAAGUGUGGCCACACCUACACUUUGACCCCCUCCCCCACCCCACACCUCUCUUCACAAGCAAUGCACAAAAAGAAAAACUUCAUCAAAAUAGUUAACUACCAAAAACUGGACAGACUGCGGAGCAAGUUAUUCCCUGCAUGAGCUGGGUUGUCAUACUAAAAUUGUAU ...(((((((((((......)))))))))))...........((((................(((.(((((......(((.(((((..((....(((((.....(((.....)))...)))))..))..))))).)))..)))))..)))))))....((((.......)))) ( -29.89, z-score = 0.29, R) >droYak2.chr2R 4556821 163 + 21139217 ACUUUAAAGUGUGGCCACACCUACACUUUGACCCGCCCCUCU-CUACACACCUCUCUACACAGCCAAUGCACAAAAAGAAAAACUUAGUUAAAAUAUUGAGCCACUAAAAACUGGGCAUUCUGAUGAGCAAGUU---------AUAAACUGUGCUCUGAUAUUAACAUUGUGU ...(((((((((((......)))))))))))...........-..(((((..........(((..(((((.............((((((......))))))(((........)))))))))))..((((((((.---------....))).)))))............))))) ( -33.80, z-score = -1.65, R) >droSec1.super_1 9903363 127 - 14215200 ACUUUAAAGUGUGGCCACACCUACACUUUGACCC-----------CCACAACUCUCUACUCAACGAAUGCACAAAGAGAAAAACUUAAUCGAAAUGU---AUUA-----CUGCUGCCAAUCAAGUUAAUAAAUGCAAAACUUCCAU--------------------------- ...(((((((((((......)))))))))))...-----------.......(((((.................)))))...............(((---(((.-----..(((........))).....))))))..........--------------------------- ( -18.73, z-score = -1.58, R) >droSim1.chr2R 11138655 123 - 19596830 ACUUUAAAGUGUGGCCACACCUACACUUUGACCCCAACCCA--CACCACAACUCUCUACUCAACGAAUGCACAAAGAGAAAAACUUAAUCGAAAUAU---AUUA-----CAACUGGCAAUGCAAAAAUUCCAU---------------------------------------- ...(((((((((((......)))))))))))..........--.........(((((.................)))))..................---....-----....(((.(((......)))))).---------------------------------------- ( -16.33, z-score = -1.90, R) >consensus ACUUUAAAGUGUGGCCACACCUACACUUUGACCC___CCCC__CCCCACACCUCUCUACUCAACGAAUGCACAAAGAGAAAAACUUAAUCAAAAUAU___AUUAC_A_ACACCUGGCAAUCAAAUGAGUAAAUU_____CU_CAAA__C_____U_U_AU_____________ ...(((((((((((......))))))))))).............................................................................................................................................. (-11.30 = -11.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:32 2011