| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,393,335 – 12,393,398 |
| Length | 63 |
| Max. P | 0.743428 |
| Location | 12,393,335 – 12,393,398 |
|---|---|
| Length | 63 |
| Sequences | 8 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 99.21 |
| Shannon entropy | 0.01726 |
| G+C content | 0.28968 |
| Mean single sequence MFE | -5.99 |
| Consensus MFE | -6.05 |
| Energy contribution | -5.94 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.04 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.743428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12393335 63 - 21146708 UCAGUCAUUUGUCUUUUGUCAUAUUAAUAAUUCCCUUUUAUUAUUGCCACCAUGAUAAUAAGC ............((((((((((..(((((((........))))))).....))))))).))). ( -5.90, z-score = -1.03, R) >droPer1.super_2 5101217 63 + 9036312 UCAGUCAUUUGUCUUUUGUCAUAUUAAUAAUUCCCUUUUAUUAUUGCCACCAUGAUAAUAAGC ............((((((((((..(((((((........))))))).....))))))).))). ( -5.90, z-score = -1.03, R) >dp4.chr3 16032338 63 + 19779522 UCAGUCAUUUGUCUUUUGUCAUAUUAAUAAUUCCCUUUUAUUAUUGCCACCAUGAUAAUAAGC ............((((((((((..(((((((........))))))).....))))))).))). ( -5.90, z-score = -1.03, R) >droAna3.scaffold_13266 15767777 63 - 19884421 UCAGUCAUUUGUCUUUUGUCAUAUUAAUAAUUCCCUUUUAUUAUUGCCACCAUGAUAAUAAGC ............((((((((((..(((((((........))))))).....))))))).))). ( -5.90, z-score = -1.03, R) >droEre2.scaffold_4845 9126502 63 + 22589142 UCAGUCAUUUGUCUUUUGUCAUAUUAAUAAUUCCCUUUUAUUAUUGCCACCGUGAUAAUAAGC ....................................((((((((..(....)..)))))))). ( -6.60, z-score = -1.39, R) >droYak2.chr2R 4550609 63 + 21139217 UCAGUCAUUUGUCUUUUGUCAUAUUAAUAAUUCCCUUUUAUUAUUGCCACCAUGAUAAUAAGC ............((((((((((..(((((((........))))))).....))))))).))). ( -5.90, z-score = -1.03, R) >droSec1.super_1 9897304 63 - 14215200 UCAGUCAUUUGUCUUUUGUCAUAUUAAUAAUUCCCUUUUAUUAUUGCCGCCAUGAUAAUAAGC ............((((((((((..(((((((........))))))).....))))))).))). ( -5.90, z-score = -0.77, R) >droSim1.chr2R 11132603 63 - 19596830 UCAGUCAUUUGUCUUUUGUCAUAUUAAUAAUUCCCUUUUAUUAUUGCCACCAUGAUAAUAAGC ............((((((((((..(((((((........))))))).....))))))).))). ( -5.90, z-score = -1.03, R) >consensus UCAGUCAUUUGUCUUUUGUCAUAUUAAUAAUUCCCUUUUAUUAUUGCCACCAUGAUAAUAAGC ............((((((((((..(((((((........))))))).....))))))).))). ( -6.05 = -5.94 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:28 2011