| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,391,064 – 12,391,174 |
| Length | 110 |
| Max. P | 0.937988 |
| Location | 12,391,064 – 12,391,174 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.18 |
| Shannon entropy | 0.33883 |
| G+C content | 0.45809 |
| Mean single sequence MFE | -30.82 |
| Consensus MFE | -21.70 |
| Energy contribution | -22.18 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.937988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12391064 110 - 21146708 ---UUGAAAUACUCU-------ACUUCUGACCAGUUGGGAAACUCACCUGGUGAAAGUUCUUCGGUGACUGCCUCUAUUUGCGAAAUUAGCAUGAGGCAACUGCCAAACAGAAGCCAAUG ---............-------.(((((((((((.(((....).)).)))))...........((((..((((((....(((.......))).))))))..))))...))))))...... ( -35.60, z-score = -3.67, R) >droSim1.chr2R 11130371 110 - 19596830 ---UUGAAAUACCCC-------ACUUCUGCCCAGUUGGGAAACUCACCUGGUGAAAGUUCUUCGGUGACUGCCUCUAUUUGCGAAAUGAGCAUGAGGCAACUGCCAAACAGAAGCCAAUG ---............-------.((((((.((((.(((....).)).))))............((((..((((((....(((.......))).))))))..))))...))))))...... ( -33.00, z-score = -2.39, R) >droSec1.super_1 9895068 117 - 14215200 ---UUGAAAUACCCUACCCUGAACUUCUGCCCAGUUGGUAAACUCACCUGGUGAAAGUUCUUCGGUGACUGCCUCUAUUUGCGUAAUUAGCAUGAGGCAACUGCCAAACAGAAGCCAAUG ---....................((((((.....((((((...(((((.((.((....)).))))))).((((((....(((.......))).))))))..)))))).))))))...... ( -31.60, z-score = -2.39, R) >droYak2.chr2R 4548290 110 + 21139217 ---UUGGAAUACUCU-------AUUUUUUUCCAACCGGGAAACUCACCUGGUGAAAGUUCUUCGGUGACUGCCUCUAUUUGCGAAAUUAGCACGAGGCAACUGCCAAACAGAAGCCAUUG ---.(((.....(((-------....(((((..((((((.......)))))))))))......((((..((((((....(((.......))).))))))..))))....)))..)))... ( -28.20, z-score = -1.47, R) >droEre2.scaffold_4845 9124177 110 + 22589142 ---UUGGAAUACUCU-------AUUUCUGCCCGGUCGGGAAACUCACCUGGAGAAAGUUCUUCGGUGACUGCCUCUAUUUGCGAAAUCAUCACGAGGCAACUGCCAAACAGAAGCCAUUG ---.(((.....(((-------.(((((.((.(((.((....)).))).))))))).......((((..((((((....((......))....))))))..))))....)))..)))... ( -30.10, z-score = -1.28, R) >droAna3.scaffold_13266 15765521 111 - 19884421 AAUACGAGAUACCCU--------UUAUUUUUUUGCUGA-AAACUCACCUGGAGAUAGUUCCUCGGUCAUUGCCAGAACUUGUGAAAUCAGAGUAAGGCAACUGCCGAGCAGUAACCAGAG .....((((((....--------.)))))).((((((.-...(((.....))).......((((((..(((((...((((.((....))))))..)))))..))))))))))))...... ( -26.40, z-score = -1.27, R) >consensus ___UUGAAAUACCCU_______ACUUCUGCCCAGUUGGGAAACUCACCUGGUGAAAGUUCUUCGGUGACUGCCUCUAUUUGCGAAAUUAGCAUGAGGCAACUGCCAAACAGAAGCCAAUG .......................((((((.((((.(((....).)).))))............((((..((((((....(((.......))).))))))..))))...))))))...... (-21.70 = -22.18 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:27 2011