| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,382,010 – 12,382,163 |
| Length | 153 |
| Max. P | 0.747903 |
| Location | 12,382,010 – 12,382,163 |
|---|---|
| Length | 153 |
| Sequences | 7 |
| Columns | 180 |
| Reading direction | forward |
| Mean pairwise identity | 59.75 |
| Shannon entropy | 0.77567 |
| G+C content | 0.48922 |
| Mean single sequence MFE | -49.38 |
| Consensus MFE | -17.69 |
| Energy contribution | -19.21 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.63 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12382010 153 + 21146708 -----------------------CGCCAGUCGGGAGACCAAGUUUCAGCUUGCCCCUAGCCAUGGAAAGUGUCUCCCAG--UCUAGUGGU-GCGUGUCCUAAAACUGGGCUUGCCUUUGGCCAGGAUGCCCAGGAUUCUAUCCAUUCACUGGAAAAAA-UUUGCAUAAAAUAUGAAUUGA -----------------------(((.((.((((((((.(..((((((((.......)))..)))))..)))))))).)--.)).)))((-(((..........((((((...(((......)))..)))))).......((((.....)))).....-..))))).............. ( -45.40, z-score = -0.48, R) >droAna3.scaffold_13266 15756494 169 + 19884421 CUCCGGUUCUCAGGAGCGAGCUGCGGAUGCUGGGAGACCAAGUUUCGACUUGCCCCUGGCCAUCGAAAGUGUCUCCUAGAAUUUGGUGAU-GCGUGCCCCAAGCUGGGUUUGGCUUUCGGUUUCCAUUUGAGAGAUUCAAUG-GUACACAGGGAGAAA-----AGAGAGGCCUUAU---- ....(((((((....(((((...((((.(((((....)).))))))).)))))(((((..........(((((.((........)).)))-))(((((((((((...))))))(((((((.......))))))).......)-)))).))))).....-----.)))).)))....---- ( -57.60, z-score = -0.05, R) >droEre2.scaffold_4845 9112899 136 - 22589142 -----------------------CGCCCGUCGGGAGACCAAGUUUCGGCUUGCCCCUGGCCAUGGAAAGUGUCCCCCAA--UCUAGGGGU-GCGUGUCCU----------------UUGGCUAGGAUGCCCAGGAUGCCCUGCCUCCACUGGAAAAAA--UUAAAACAAUUUUGAUUCUA -----------------------...(((...((((..........(((.....((((((((.(((...((..((((..--....)))).-.))..))).----------------.))))))))..)))((((....)))).))))..)))....((--(((((.....)))))))... ( -46.10, z-score = -0.89, R) >droYak2.chr2R 4539312 158 - 21139217 ---------CGCCAGUCGGGAGCUGGGAGUUGGGAGACCAAGUUUCGGCUUGCCCCUGGCCAUGGAAAGUGUCUCCCAG--UCUAGUGGU-GCGUGUCCUAAAACUGGGUUUGCCUUUGGCUAGGAUGCCCGGUUUCCCGUACCUCCACUGGGAAAAA----------AAUUUGAUUCUA ---------.(((((..(.((((((..(.((((....)))).)..)))))).)..))))).............((((((--(...(.(((-(((.(.....(((((((((...(((......)))..)))))))))).)))))).).)))))))....----------............ ( -68.30, z-score = -3.31, R) >droSec1.super_1 9885878 154 + 14215200 -----------------------CGCCAGUCGGGAGACCAAGUUUCGGCUUGCCCCUGGCCAUGGAAAGUGUCUCCCAG--UCUAGCGGU-GCGUGUCCUAAAACUGGGUUUGCCUUUGGCCAGGAUGCCCAGGAUCCCAUACCUCCACUGGAAAAAAAUCUCCAAAAAAUUUGAAUAUA -----------------------.((.((.((((((((.(..((((((((.......))))..))))..)))))))).)--.)).))((.-(.((((.......((((((...(((......)))..))))))......))))).))..((((........))))............... ( -46.12, z-score = -0.30, R) >droSim1.chr2R 11120901 154 + 19596830 -----------------------CGCCAGUCGGGAGACCAAGUUUCGGCUUGCCCCUGGCCAUGGAAAGUGUCUCCCAG--UCUAGCGGU-GCGUGUCCUAAAACUGGGUUUGCCUUUGGCCAGGAUGCCCAGGAUCCCAUACCUCCACUGGAAAAAAUGUUCCAAUAAAUAUGAAUAUA -----------------------........(((((((.(..((((((((.......))))..))))..))))))))..--(((((.((.-(.((((.......((((((...(((......)))..))))))......))))).)).)))))....((((((..........)))))). ( -47.42, z-score = -0.52, R) >droWil1.scaffold_180700 5802461 153 - 6630534 -------------------CAUUUUUCAAUGAGGAAAUGAAAAUUUA--UUGAACAUAAAUUUAGGAUCUUACUCUCAGUUCAUGUUUUUUGAGUAAUUUUAAGGACUUUUCAUUUCCCACGACCAUGUAUAAAGUCUAGUCAUUAAACAGACUUUGC-UCGACAUUGGCAUUGA----- -------------------......((((((.(((((((((((((((--..((((((.((((.(((.......))).)))).))))))..))))).............)))))))))).....((((((.((((((((.((......)))))))))).-...))).)))))))))----- ( -34.71, z-score = -2.31, R) >consensus _______________________CGCCAGUCGGGAGACCAAGUUUCGGCUUGCCCCUGGCCAUGGAAAGUGUCUCCCAG__UCUAGUGGU_GCGUGUCCUAAAACUGGGUUUGCCUUUGGCCAGGAUGCCCAGGAUCCCAUACCUCCACUGGAAAAAA__UU_CAAAAAAUUUGAAU_UA ...............................((((((.((..(((((....((.....))..)))))..))))))))....(((((.((..(((.((((.......)))).)))(((.(((......))).)))...........)).)))))........................... (-17.69 = -19.21 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:26 2011