| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,373,459 – 12,373,517 |
| Length | 58 |
| Max. P | 0.872391 |
| Location | 12,373,459 – 12,373,517 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 79.89 |
| Shannon entropy | 0.41221 |
| G+C content | 0.42067 |
| Mean single sequence MFE | -13.81 |
| Consensus MFE | -6.70 |
| Energy contribution | -7.03 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.70 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.872391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12373459 58 + 21146708 CAAAGCAGCGACUUCGCACAUGAUAAACAAGAUGCAUGGUCAACAAACGUUGGCCAAA ....((((((....)))...((.....))...))).((((((((....)))))))).. ( -16.90, z-score = -3.04, R) >droAna3.scaffold_13266 15750766 58 + 19884421 CAAAACAGUGUCUUGGUACUUGAUAAACAAGAUGCUUGGUGAACAAACAUUCGCCAAA .......((((((((............))))))))((((((((......)))))))). ( -16.80, z-score = -3.23, R) >droEre2.scaffold_4845 9105524 58 - 22589142 CAAAGCAGCGACUUCGCACAUGAUAAACAAGAUGCAUGGCCAACAAACAUUGGCCAAA ....((((((....)))...((.....))...))).(((((((......))))))).. ( -16.20, z-score = -3.34, R) >droYak2.chr2R 4530647 58 - 21139217 CAAAGCAGCGACUUCGCACAUGAUAAACAAGAUGCAUGGUCAACAAACAUUGGCUGAA .....((((((((..((((.((.....)).).)))..))))..((.....)))))).. ( -12.20, z-score = -1.21, R) >droSec1.super_1 9877071 58 + 14215200 CAAAGCAGCAACUUCGCACAUGAUAAACAAGAUGCAUGGUCAACAAACGUUGGCCAAA ....(((((......))...((.....))...))).((((((((....)))))))).. ( -14.10, z-score = -2.14, R) >droSim1.chr2R 11112107 58 + 19596830 CAAAGCAGCGACUUCGCACAUGAUAAACAAGAUGCAUGGUCAACAAACGUUGGCCAAA ....((((((....)))...((.....))...))).((((((((....)))))))).. ( -16.90, z-score = -3.04, R) >droVir3.scaffold_12875 18895546 53 + 20611582 CACACCCACGUAUUCACUUGUAAUAAACAUUA---ACAAUCAGCUUGCA--AGCUAAA ................(((((((.........---.........)))))--))..... ( -3.57, z-score = -0.06, R) >consensus CAAAGCAGCGACUUCGCACAUGAUAAACAAGAUGCAUGGUCAACAAACAUUGGCCAAA .......(((....)))...................(((((((......))))))).. ( -6.70 = -7.03 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:24 2011