| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,362,389 – 12,362,482 |
| Length | 93 |
| Max. P | 0.740751 |
| Location | 12,362,389 – 12,362,482 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 77.41 |
| Shannon entropy | 0.40954 |
| G+C content | 0.53375 |
| Mean single sequence MFE | -31.27 |
| Consensus MFE | -15.75 |
| Energy contribution | -15.67 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12362389 93 + 21146708 AAGCCCAUUAAGAGGC---AGGCUAAGCCAGUGCGUUUGACUGUAUUGGAGUGGAG---AGUGGUGAGUGGCUUGCAUGGGUGUGGGCUUGUGGCAAGU ((((((((......((---((((((.((((.(...(((.(((.......))).)))---).))))...))))))))......))))))))......... ( -33.40, z-score = -2.14, R) >droYak2.chr2R 4516050 81 - 21139217 CAGCCCAUUAAGAGGC---AGGCUAAGCCAGUGCUUUUGACUGUAUUGG-----AG---AGUGG-------CUUGCAGGAGUGUGGGCUUGUGGCAAGU .(((((((......((---((((((..(((((((........)))))))-----..---..)))-------)))))......))))))).......... ( -34.40, z-score = -2.95, R) >droEre2.scaffold_4845 9092929 81 - 22589142 CAGCCCAUUAAGAGGC---AGGCUAAGCCAGUGCUUUUGAGUGUAUUGG-----AG---AGUGG-------CUUGCAGGAGUGUGGGUUUGUGGCAAGU .(((((((......((---((((((..(((((((........)))))))-----..---..)))-------)))))......))))))).......... ( -32.00, z-score = -3.42, R) >droSec1.super_1 9859733 89 + 14215200 AAGCCCAUUAAGAGGCGGCAGGCUAAGCCAGUGCGUUUGACUGUAUUGGAGUGGAG---AGUGG-------CUUGCAUGGGUGUGGGUUUGUGGCAAGU ((((((((.........((((((((..((((((((......)))))))).......---..)))-------)))))......))))))))......... ( -28.76, z-score = -0.83, R) >droSim1.chr2R 11098597 89 + 19596830 AAGCCCAUUAAGAGGCGGCAGGCUAAGCCAGUGCGUUUGACUGUAUUGGAGUGGAG---AGUGG-------CUUGCAUGGGUGUGGGUUUGUGGCAAGU ((((((((.........((((((((..((((((((......)))))))).......---..)))-------)))))......))))))))......... ( -28.76, z-score = -0.83, R) >droAna3.scaffold_13266 15740472 95 + 19884421 AAUCCCAUUAAGAGGC---AUGCUAAGCCAGU-CGAGGAGUGGAGUUCGGUUUCAGUUUAUUGGCGUAGCACGGGUCGUUGUGUGGGAGGGCGGCAAGU ..((((((.....(((---.(((((.((((((-...(((.(((((.....))))).))))))))).)))))...))).....))))))........... ( -30.30, z-score = -1.76, R) >consensus AAGCCCAUUAAGAGGC___AGGCUAAGCCAGUGCGUUUGACUGUAUUGGAGUGGAG___AGUGG_______CUUGCAGGGGUGUGGGUUUGUGGCAAGU .(((((((.....(((.....)))...(((((((........))))))).................................))))))).......... (-15.75 = -15.67 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:23 2011