| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,340,322 – 12,340,424 |
| Length | 102 |
| Max. P | 0.842649 |
| Location | 12,340,322 – 12,340,424 |
|---|---|
| Length | 102 |
| Sequences | 8 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 87.90 |
| Shannon entropy | 0.23799 |
| G+C content | 0.47466 |
| Mean single sequence MFE | -32.52 |
| Consensus MFE | -21.00 |
| Energy contribution | -21.94 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12340322 102 + 21146708 CUGUGCCGAAUUAGGCACAAAAAUUCUCAAUUGAAUUGGCCCUGAUAAUGACAACUUCAUGCAUUAUGCCUGGCC-CCGGGGCCCGGGGAAUACGGACAUAUG .((((((......))))))..(((((......)))))..(((((((((((.((......))))))))....((((-....))))))))).............. ( -32.70, z-score = -1.80, R) >droSim1.chr2R 11076602 102 + 19596830 CUGUGCCGAAUUAGGCACAAAAAUUCUCAAUUGAAUUGGCCCUGAUAAUGACAACUUCAUGCAUUAUGCCUGCCC-CCGGGGCACGGGGAAUACGGACAUAUG .((((((......))))))..(((((......)))))..(((((((((((.((......))))))))...(((((-...)))))))))).............. ( -31.30, z-score = -1.95, R) >droSec1.super_1 9837828 102 + 14215200 CUGUGCCGAAUUAGGCACAAAAAUUCUCAAUUGAAUUGGCCCUGAUAAUGACAACUUCAUGCAUUAUGCCUGCCC-CCGGGGCACAGGGAAUACGGACAUAUG .((((((......))))))..(((((......)))))..(((((((((((.((......))))))))...(((((-...)))))))))).............. ( -32.00, z-score = -2.46, R) >droYak2.chr2R 4493655 102 - 21139217 CUGUGUCGAAUUAGGCACAAAAAUUCUCAAUUGAAUUGGCCCUGAUAAUGACAACUUCAUGCAUUAUGCCUGCCC-CCGGGGCCUGGGGAAUAUGGACAUAUG .((((((....(((((.....(((((......))))).......((((((.((......))))))))))))).((-((((...))))))......)))))).. ( -28.70, z-score = -0.98, R) >droEre2.scaffold_4845 9070770 102 - 22589142 CUGUGCCGAAUUAGGCACAAAAAUUCUCAAUUGAAUUGGCCCUGAUAAUGACAACUUCAUGCAUUAUGCCUGCCC-CCGGGGCCCGGGGAAUACGGACAUAUG .(((((((...(((((.....(((((......))))).......((((((.((......))))))))))))).((-((((...))))))....))).)))).. ( -31.50, z-score = -1.69, R) >droAna3.scaffold_13266 15716406 102 + 19884421 CUGUGCCGAAUUAGGCACGAAAAUUCUCAAUUGAAUUGGCCCUGAUAAUGACAACUUCAUGCAUUAUGCGUGCCC-CGGGCCCCCGGGGGUAACGUGGACAUG ..(((((......)))))(..(((((......)))))..)((..((((((.((......))))))))((((.(((-(((....))))))...))))))..... ( -35.90, z-score = -2.16, R) >dp4.chr3 15975458 101 - 19779522 CUCUGCCGAAUUAGACACGAAAAUUCUCAAUUGAAUUGGCCCUGAUAAUGACAACUUCAUGCAUUAUGCGUUUACAUCGGGGCCAAAGGGCAGAGGACAGA-- ((((((((((((.........))))).........(((((((((((.((((.....))))((.....))......)))))))))))..)))))))......-- ( -36.50, z-score = -4.79, R) >droPer1.super_2 5048226 100 - 9036312 CUCUGCCGAAUUAGACACGAAAAUUCUCAAUUGAAUUGGCCCUGAUAAUGACAACUUCAUGCAUUAUGCGUUUACAUCGGG-CCAAAGGGCAGAGGACAGA-- ((((((((((((.........))))).........(((((((.(((.((((.....))))((.....))......))))))-))))..)))))))......-- ( -31.60, z-score = -3.49, R) >consensus CUGUGCCGAAUUAGGCACAAAAAUUCUCAAUUGAAUUGGCCCUGAUAAUGACAACUUCAUGCAUUAUGCCUGCCC_CCGGGGCCCGGGGAAUACGGACAUAUG .((((((......))))))..(((((......)))))(((((((...((((.....))))((.....))........)))))))................... (-21.00 = -21.94 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:20 2011