| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,288,140 – 12,288,242 |
| Length | 102 |
| Max. P | 0.869075 |
| Location | 12,288,140 – 12,288,242 |
|---|---|
| Length | 102 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 79.50 |
| Shannon entropy | 0.38670 |
| G+C content | 0.38205 |
| Mean single sequence MFE | -17.42 |
| Consensus MFE | -11.48 |
| Energy contribution | -11.62 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12288140 102 - 21146708 UAAUUAAACACUAAUAGUUGGGGUGCAGAUAAAAAAAAAACGC--------AGCACAGCUCGGGUAAAAUAAAACACAACUUAAGUGGCGGAAGUGACGGUCAAGAUGGG .........(((...(((((.(.(((...............))--------).).)))))..)))...........((.(((..((.((....)).))....))).)).. ( -18.06, z-score = -1.20, R) >droSim1.chr2R 11021246 99 - 19596830 UAAUUAAACACUAAUAGUUGGGGUGCAG---AAAAAAAAGCGC--------CGCACAGCUCGGGUAAAAUAAAACACAUCUUAAGUGGCGGAAGUGACGGUCAAGAUGGG .........(((...(((((((((((..---........))))--------).).)))))..)))...........((((((..((.((....)).))....)))))).. ( -26.60, z-score = -3.20, R) >droSec1.super_1 9785935 100 - 14215200 UAAUUAAACACUAAUAGUUGGGGUGCAG--AAAAAAAAAACGC--------CGCACAGCUCGGGUAAAAUAAAACACAUCUUAAGUGGCGGAAGUGACGGUCAAGAUGGG .........(((...((((((((((...--..........)))--------).).)))))..)))...........((((((..((.((....)).))....)))))).. ( -22.52, z-score = -2.07, R) >droYak2.chr2R 4440254 110 + 21139217 UAAUUAAACACUAAUAGUUGGGGUGAAAAAAAAUAAAUAAAAUGCAGAGAAUGGAGAGCUUGGGUAAAAUAAAACACAUCUUAAGUGGCGGAAGUGACGGUCAAGAUGGG ........((((.........)))).................(((.(((.........)))..)))..........((((((..((.((....)).))....)))))).. ( -15.90, z-score = -1.27, R) >droEre2.scaffold_4845 9017080 101 + 22589142 UAAUUAAACACUAAUAGUUGGGGUGCAAA-AAAAAAAAAGCA--------AUAGAGAGCUCGGGUAAAAUAAAACACAUCUUAAGUGGCGGAAGUGACGGUCAGGAUGGG .........(((...((((....(((...-.........)))--------......))))..)))...........((((((..((.((....)).))....)))))).. ( -16.10, z-score = -1.26, R) >droAna3.scaffold_13266 15663531 95 - 19884421 UAAUUAAACGCUAAUAGUUGCGGCAAAAAGAAAAAAAUACAA--------------AGCUU-GGUUAAAUAAAACACAUCUUAAGUGGCGGAAGUGACGGUCAAGACGGG ........(((........)))....................--------------.((((-((((......))).........((.((....)).))...)))).)... ( -13.90, z-score = -0.23, R) >dp4.chr3 15922830 83 + 19779522 UAAUUAAACACUAAUAGUUG----AAAAAAAAACAGAAAGAG-----------------------AAAAUAAAGCACAUCUUAAGUGGCGGAAGUGACGGUCAAGAUGGG ................(((.----.......)))........-----------------------...........((((((..((.((....)).))....)))))).. ( -13.30, z-score = -2.54, R) >droPer1.super_2 4994347 82 + 9036312 UAAUUAAACACUAAUAGUUG-----AAAAAAAGCAGAAAGAG-----------------------AAAAUAAAGCACAUCUUAAGUGGCGGAAGUGACGGUCAAGAUGGG ................(((.-----......)))........-----------------------...........((((((..((.((....)).))....)))))).. ( -13.00, z-score = -2.06, R) >consensus UAAUUAAACACUAAUAGUUGGGGUGAAAA_AAAAAAAAAGAG__________G_A_AGCUCGGGUAAAAUAAAACACAUCUUAAGUGGCGGAAGUGACGGUCAAGAUGGG ............................................................................((((((..((.((....)).))....)))))).. (-11.48 = -11.62 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:15 2011