| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,277,034 – 12,277,144 |
| Length | 110 |
| Max. P | 0.865544 |
| Location | 12,277,034 – 12,277,144 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 83.62 |
| Shannon entropy | 0.31620 |
| G+C content | 0.44537 |
| Mean single sequence MFE | -24.67 |
| Consensus MFE | -17.06 |
| Energy contribution | -18.47 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12277034 110 - 21146708 CUCAUUGCUGGCUUUUGUUUAGUCGUCGGCAUAGCUUAGGCCAGCACUUUUUUUUACCAUUUCGCCUUUUUGGCCUUAAUUAUAGACACGCACACGAGCACACUCAGUCG .....(((((((((..(((..((.....))..)))..))))))))).................(((.....)))..........(((..(....)(((....))).))). ( -26.00, z-score = -1.97, R) >droEre2.scaffold_4845 9005965 107 + 22589142 CUCAUUGCUGGCUUUUGUUUAGUCGUCGGCAGAGCUAAGGCCAGCACUUUUUU---CCAUUUCGCCUUUUUGGCCUUAAUUAUAGACACGCACACGAGCACACUCAGUCG .....((((((((((.((((.((.....)).)))).)))))))))).......---.......(((.....)))..........(((..(....)(((....))).))). ( -28.50, z-score = -2.24, R) >droYak2.chr2R 4430916 108 + 21139217 CUCAUUGCUGGCUUUUGUUUAGUCGUCGGCAAAGCUUAGGCCAGCACUUUUUUU--CCAUUUCGCCUUUUUGGCCUUAAUUAUAGACACGCACACGAGCACACUCAGUCG .....(((((((((..((((.((.....)).))))..)))))))))........--.......(((.....)))..........(((..(....)(((....))).))). ( -28.00, z-score = -2.54, R) >droSec1.super_1 9774648 107 - 14215200 CUCAUUGCUGGCUUUUGUUUAGACGGUGGCAUAGCUUAGGCCAGCAC-UUUUUU--CCAUUUCGCCUUUUUGGCCUUAAUUAUAGACACGCACACGAGCACACUCAGUCG .....(((((((((..(((.............)))..))))))))).-......--.......(((.....)))..........(((..(....)(((....))).))). ( -23.62, z-score = -0.63, R) >droSim1.chr2R 11009330 100 - 19596830 CUCAUUGCUGGCUUUUGUUUAGUCGUUGGCAUAGCUUAGGCCAGCACUUUUUUU--CCAUUUCGCCUUUUUGGCCUUAAUUAUAGACAC--------GCACACUCAGUCG .....(((((((((..(((..((.....))..)))..)))))))))........--.......(((.....)))..........(((..--------.........))). ( -24.10, z-score = -2.19, R) >droPer1.super_2 4982582 89 + 9036312 CUCAUUUCUGGCUUUUGUUU---CAUCAAAAAAGCAUAGGCUAGCACUUUUUUU------------------GGCUUAAUUAUAGACACGCACAGGAAUACACCCACAAA ...(((((((((((((....---......)))))).((((((((........))------------------))))))..............)))))))........... ( -17.80, z-score = -2.20, R) >consensus CUCAUUGCUGGCUUUUGUUUAGUCGUCGGCAUAGCUUAGGCCAGCACUUUUUUU__CCAUUUCGCCUUUUUGGCCUUAAUUAUAGACACGCACACGAGCACACUCAGUCG (((..(((((((((..(((..((.....))..)))..))))))))).................(((.....))).....................)))............ (-17.06 = -18.47 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:14 2011