| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,270,943 – 12,271,036 |
| Length | 93 |
| Max. P | 0.983388 |
| Location | 12,270,943 – 12,271,036 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 71.39 |
| Shannon entropy | 0.51014 |
| G+C content | 0.45969 |
| Mean single sequence MFE | -29.76 |
| Consensus MFE | -17.10 |
| Energy contribution | -17.89 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.983388 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12270943 93 - 21146708 -------------UGCGUGCGGAAUUCACGGGAAUUUAUUAGUUAAGUCUAGCUGAUUGUUCCUGGUCCGCCGUUUGGAAUAACUCGGGCUC------------CCUUGAUUUUCCGU -------------.(((.(((((.....(((((((..((((((((....)))))))).))))))).))))))))..((((...(..((....------------))..)...)))).. ( -33.20, z-score = -3.14, R) >droPer1.super_2 4977050 97 + 9036312 GAUGCGUAUGGGAGGAGUAC-GUAUACGGGUGAAUUUAUUAGUUAAGUCGGUCUGAUUGUUCCUGCCUCUGCCUCUGCCUCUGCUGCUGCGCUUCCAU-------------------- ((.((((((((.((..(((.-(((...((((((((..(((((..........))))).))))..)))).)))...)))..)).))).))))).))...-------------------- ( -22.00, z-score = 1.39, R) >droAna3.scaffold_13266 15646670 92 - 19884421 -------------UGCGUGCGGAAUGCAAGAAAAUUUAUUAGUUAAGUCUGGCUGAUUGUUCUCGUUUUUUUCGUUGAAAUAAGUGUGUUUU------------ACCAGAUUUUUCA- -------------(((((.....))))).............(..((((((((..((.....((..((((.......))))..)).....)).------------.))))))))..).- ( -17.50, z-score = -0.43, R) >droEre2.scaffold_4845 9000042 93 + 22589142 -------------UGCGUGCGGAAUUCACGGGAAUUUAUUAGUUAAGUCUAGCUGAUUGUUCCUGGUCUGCCGCUUGGAAUAACUCCGCUUC------------CCUUGAUUUUCCGU -------------.....((((((.(((.(((((....(((((((....)))))))(((((((.(((.....))).)))))))......)))------------)).)))..)))))) ( -29.70, z-score = -2.93, R) >droYak2.chr2R 4424807 105 + 21139217 -------------UGCGUGCGGAAUGCACGGGAAUUUAUUAGUUAAGUCUAGCUGAUUGUUCCUGGUCCGCCGUUUGGAAUAACUCGGGCUCGGAAUCGGGCUCCCUUGAUUUUCCGU -------------.(((.(((((.....(((((((..((((((((....)))))))).))))))).))))))))..((((......(((((((....)))))))........)))).. ( -39.84, z-score = -2.71, R) >droSec1.super_1 9768658 93 - 14215200 -------------UGCGUGCGGAAUUCACGGGAAUUUAUUAGUUAAGUCUAGCUGAUUGUUCCUGGUCCGCCGUUUGGAAUAACUCGGGCUU------------CCUUGAUUUUCCGU -------------.(((.(((((.....(((((((..((((((((....)))))))).))))))).))))))))..((((....(((((...------------.)))))..)))).. ( -32.90, z-score = -3.22, R) >droSim1.chr2R 11003331 93 - 19596830 -------------UGCGUGCGGAAUUCACGGGAAUUUAUUAGUUAAGUCUAGCUGAUUGUUCCUGGUCCGCCGUUUGGAAUAACUCGGGCUC------------CCUUGAUUUUCCGU -------------.(((.(((((.....(((((((..((((((((....)))))))).))))))).))))))))..((((...(..((....------------))..)...)))).. ( -33.20, z-score = -3.14, R) >consensus _____________UGCGUGCGGAAUUCACGGGAAUUUAUUAGUUAAGUCUAGCUGAUUGUUCCUGGUCCGCCGUUUGGAAUAACUCGGGCUC____________CCUUGAUUUUCCGU ..............(((.(((((.....(((((((..((((((((....)))))))).))))))).))))))))............................................ (-17.10 = -17.89 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:13 2011