| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,263,714 – 12,263,824 |
| Length | 110 |
| Max. P | 0.779781 |
| Location | 12,263,714 – 12,263,824 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.62 |
| Shannon entropy | 0.30823 |
| G+C content | 0.31596 |
| Mean single sequence MFE | -23.53 |
| Consensus MFE | -14.78 |
| Energy contribution | -15.54 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.779781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12263714 110 - 21146708 AGUGAAUAAACUACUUUAUUCAAGCUGCAAAAAUAAAUGUGAAAAAUAUUUAAUCAGAUCAGC-AAGCUGAUUACAGUC--------AAGCUUAU-CCAGGGAUAGAAUAGUAAUCGAAU .........((((.(((((((..((((......(((((((.....))))))).......))))-((((((((....)))--------.)))))..-....))))))).))))........ ( -22.62, z-score = -2.20, R) >droSim1.chr2R 10995398 119 - 19596830 AGUGAAUAAACUACAUUAUUCAAGCUGCACAAGUAAAUGUGCAAAAUAUUUAAUCAGAUCAGC-AAGCUGAUUACAGUCCUAUAUAAAAGCUUAUCCCAGGGCUUAAAUAGUAAUCGAAC ..(((((((......)))))))...((((((......))))))...(((((((...((((((.-...))))))...(((((..((((....))))...)))))))))))).......... ( -25.50, z-score = -2.47, R) >droSec1.super_1 9761395 117 - 14215200 AGUGA--UAACUACAUAAUUCAAGCUGCACAAGUAAAUGUGC-AAAUAUUUAAUCAGAUCAGCGGAGCUGAUUACAGUACUAUAUAAAAGCUUAUCCCAGGGCUUAAAUAGUAAUCGAAC ..(((--(.((((..........((((((((......)))))-.............(((((((...)))))))..))).........((((((......))))))...)))).))))... ( -24.20, z-score = -1.47, R) >droYak2.chr2R 4417527 118 + 21139217 AGUGAAUAAAAUACUUUAUUCAUGUUGCAGAAGUAAAUGUACAAAAAAUUUAAUCAGAUCAGC-AAGCCGAUUACAAUCCGGUUGCAAAGCUUAU-UCAAAGCUUAAAAAGUAAUUGAAC .(((((((((....)))))))))..((((........))))............((((....((-((.(((.........))))))).((((((..-...)))))).........)))).. ( -21.70, z-score = -1.67, R) >droEre2.scaffold_4845 8992905 118 + 22589142 GGUGAAUAAAAUACUUUAUUCAUGCUGCAGCAGUAAAUGUACAAAAUAUUUAAUCAGAUCAGC-AAGCCGAUUACAAUCCUGUUUUACAGCUUAU-CCAAAGCUUAAAUAGUAAUUCAAC ((((((((((....))))))).(((((......(((((((.....))))))).......))))-).)))..........((((((...(((((..-...))))).))))))......... ( -23.62, z-score = -2.45, R) >consensus AGUGAAUAAACUACUUUAUUCAAGCUGCACAAGUAAAUGUGCAAAAUAUUUAAUCAGAUCAGC_AAGCUGAUUACAGUCCUAUAUAAAAGCUUAU_CCAGGGCUUAAAUAGUAAUCGAAC ..(((((((......))))))).((((......(((((((.....)))))))....(((((((...))))))).)))).........((((((......))))))............... (-14.78 = -15.54 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:11 2011