| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,249,833 – 12,249,941 |
| Length | 108 |
| Max. P | 0.602818 |
| Location | 12,249,833 – 12,249,941 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 87.78 |
| Shannon entropy | 0.21605 |
| G+C content | 0.54444 |
| Mean single sequence MFE | -35.72 |
| Consensus MFE | -25.96 |
| Energy contribution | -27.08 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12249833 108 + 21146708 CCAGAUUGUCCAUGUGCCGGACCACAGCAAAAAGGAGCAGGACUAAUUGUCGUUCAAGGGCAAGUGCCGGAUACCGAUCCCGACUGCGAGUGCUCCAUGGACGAACGA ...(.((((((((.(((.(.....).)))....(((((...(((....((((......(((....)))((((....))))))))....)))))))))))))))).).. ( -36.20, z-score = -1.53, R) >droSim1.chr2R 10980897 108 + 19596830 CCAGAUUGUCCAUGUGCCGGACAACAGCAAAAAGGAGCAGGACUUAUUGUCGUUCAAGCGCAAGUGCCGGAUAACGAUCCUGAUUGCGAGUGCUCCAUGGACGAACGA ...(.((((((((.(((.(.....).)))....((((((.(((.....))).......(((((...(.((((....)))).).)))))..)))))))))))))).).. ( -37.00, z-score = -2.29, R) >droSec1.super_1 9747460 108 + 14215200 CCAGAUUGUCCAUGUGCCGGACAACAGCAAAAAGGAGCAGGACUUAUUGUCGUUCAAGGGCAAGUGCCGGAUACCGAUCCCGACUGCGAGUGCUCCAUGGACGAACGA ...(.((((((((.(((.(.....).)))....(((((...((((...((((......(((....)))((((....))))))))...))))))))))))))))).).. ( -36.70, z-score = -1.73, R) >droYak2.chr2R 4403291 108 - 21139217 CCAGAUUGUCCACUAUCCGGACAACAGCAAAAAGGAGCAAUACUCAUUGUCGUGCCAAGUCAAGAGCCGAAAGACGAUCCCGACUGCGAGUGCUCCAUGGACGACCAG (((..((((((.......)))))).........(((((...((((...((((.(....(((...........)))....)))))...))))))))).)))........ ( -28.90, z-score = -1.61, R) >droEre2.scaffold_4845 8979164 108 - 22589142 CCAGAUUGUCCGCAAUCUGGACAACAGCAAAAAGGAGCGGCACUCAUUGCCGUUCAAGGGCAAGUGCCGGAAGACGAUCCCGACUGCGAGUGCUCCAUGGACGACCGA ((((((((....)))))))).............(((((((((((...((((.......))))))))))(((......)))...........))))).(((....))). ( -39.80, z-score = -2.13, R) >consensus CCAGAUUGUCCAUGUGCCGGACAACAGCAAAAAGGAGCAGGACUCAUUGUCGUUCAAGGGCAAGUGCCGGAUAACGAUCCCGACUGCGAGUGCUCCAUGGACGAACGA (((..((((((.......)))))).........(((((...((((...((((......(((....)))((((....))))))))...))))))))).)))........ (-25.96 = -27.08 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:08 2011