| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,243,331 – 12,243,427 |
| Length | 96 |
| Max. P | 0.505240 |
| Location | 12,243,331 – 12,243,427 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 88.34 |
| Shannon entropy | 0.22067 |
| G+C content | 0.60705 |
| Mean single sequence MFE | -36.75 |
| Consensus MFE | -31.23 |
| Energy contribution | -30.60 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12243331 96 - 21146708 ---GGCGAUGACGGCCACGACGACAGACGGAAGCGGAAACGGCAAAUAAACGCACGAGCGCUGACGUGCGGGCACCAGCGUGUCAGCGUCCGUGUCUUU ---..........(((.........(.(....))(....))))........(((((..(((((((((((.(....).)))))))))))..))))).... ( -36.20, z-score = -0.59, R) >droEre2.scaffold_4845 8972619 96 + 22589142 ---AGCGAUGACGGCCACGACGACAGACGGAAGCGGAAACGGCAAAUAAACGCACGAGCGCUGACGUGCGGGCACCAGCGUGUCAGCGUCCGUGUCUUU ---..........(((.........(.(....))(....))))........(((((..(((((((((((.(....).)))))))))))..))))).... ( -36.20, z-score = -0.72, R) >droYak2.chr2R 4396611 96 + 21139217 ---AGCGAUGACGGCCACGACGACAGACGGAAGCGGAAACGGCAAAUAAACGCACGAGCGCUGACGUGCGGGCACCAGCGUGUCAGCGUCCGUGUCUUU ---..........(((.........(.(....))(....))))........(((((..(((((((((((.(....).)))))))))))..))))).... ( -36.20, z-score = -0.72, R) >droSec1.super_1 9741107 96 - 14215200 ---GGCGAUGACGGCCACGACGACAGACGGAAGCGGAAACGGCAAAUAAACGCACGAGCGCUGACGUGCGGGCACCAGCGUGUCAGCGUCCGUGUCUUU ---..........(((.........(.(....))(....))))........(((((..(((((((((((.(....).)))))))))))..))))).... ( -36.20, z-score = -0.59, R) >droSim1.chr2R 10974422 96 - 19596830 ---GGCGAUGACGGCCACGACGACAGACGGAAGCGGAAACGGCAAAUAAACGCACGAGCGCUGACGUGCGGGCACCAGCGUGUCAGCGUCCGUGUCUUU ---..........(((.........(.(....))(....))))........(((((..(((((((((((.(....).)))))))))))..))))).... ( -36.20, z-score = -0.59, R) >droAna3.scaffold_13266 15617477 99 - 19884421 GGAAGCGAUGACGCUGACGACGACAGCCGGAAACGGAAACGGCAAAUAAACGCACGAGCGCUGACGUGCGGGCACCAGCGUGUCAGCGUCCUUGUCUUU .(((((((.(((((((((.(((.(.((((....)(....)))).......((((((........)))))).......))))))))))))).))).)))) ( -43.80, z-score = -3.46, R) >dp4.chr3 15875305 96 + 19779522 ---GUUGAGGACGACGACGUGGACGAGGACAGACGGAAACGGAAAAUAAACGCAAGAGCGCUGACGUGCGGGCACCAGCGUGUCAGCGUGCUUGUCUCU ---((((....)))).....(((((((.((...((....))..........((....))((((((((((.(....).)))))))))))).))))))).. ( -34.90, z-score = -1.58, R) >droPer1.super_2 4948005 96 + 9036312 ---GUUGAGGACGACGACGUGGACGAGGACAGACGGAAACGGAAAAUAAACGCAAGAGCGGUGACGUGCGGUCACCAGCGUGUCAGCGUGCUUGUCUCU ---((((....))))((((.(.(((..((((..((....)).........(....).((((((((.....)))))).)).))))..))).).))))... ( -34.30, z-score = -1.33, R) >consensus ___GGCGAUGACGGCCACGACGACAGACGGAAGCGGAAACGGCAAAUAAACGCACGAGCGCUGACGUGCGGGCACCAGCGUGUCAGCGUCCGUGUCUUU ....((.....((....))..............((....))))........(((((..(((((((((((.(....).)))))))))))..))))).... (-31.23 = -30.60 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:07 2011