| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,046,087 – 3,046,203 |
| Length | 116 |
| Max. P | 0.677053 |
| Location | 3,046,087 – 3,046,203 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 63.18 |
| Shannon entropy | 0.59976 |
| G+C content | 0.32256 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -6.28 |
| Energy contribution | -10.03 |
| Covariance contribution | 3.75 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3046087 116 - 23011544 AUUUACUAUCGAUCUGUAUUCAAGCCUUGAAAUUUUAAAAUUUUGACAUUUUUCGUAAAAUUUGAUGAUGGUACCCCUUAUCA-AAAAUGCGAAAAUUAGUCAAAAAAUGGAUUUUC- ..........(((((((.((((.....)))).........(((((((..((((((((...((((((((.((....))))))))-))..))))))))...))))))).)))))))...- ( -26.20, z-score = -3.58, R) >droAna3.scaffold_12916 1476076 104 + 16180835 AUGCGCU-UCAAACUGCAUUAAA------AGAUUGGAAAAUUCAAACAAUC----CAAAAUC--AUGAUGGUACCCCUUAAAAAAAUUUCAAAAAAUG-GUCAAAAUUUUGAUUGUUU ......(-((((.((........------)).)))))......((((((((----.(((((.--.((((.((.......................)).-))))..))))))))))))) ( -13.90, z-score = 0.17, R) >droPer1.super_39 747 114 - 745454 CCAGACUGUCGAUCGGUGUCAAAAUCUC-AACUUCGAAAAUGAGGCCGAUUUUUGCAAAAUUUAAUGAU-GUAACCAUCAUGAUUUUUUGCGAAUAUC-GUGGAAAAAUGGAUGUCC- ...(((.((((((((((.(((...((..-......))...))).)))))))(((((((((....(((((-(....))))))....)))))))))....-...........)))))).- ( -31.10, z-score = -2.40, R) >dp4.chrXL_group3a 450849 109 - 2690836 CCAGACUGUCGAUCGGUGUCAAAAUCUC-GACUUCGAAAAUGAGGCCGAUUUUCGCAAAAUUUAAUGAU-GUAACCAUCAUGAUUUUUUGCGAAAAUC-GUGAAAAAAUUGA------ ........(((((.(((.(((.....((-(....)))...))).)))(((((((((((((....(((((-(....))))))....)))))))))))))-........)))))------ ( -34.00, z-score = -3.90, R) >consensus ACAGACUGUCGAUCGGUAUCAAAAUCUC_AAAUUCGAAAAUGAGGACAAUUUUCGCAAAAUUUAAUGAU_GUAACCAUCAUGAUAAUUUGCGAAAAUC_GUCAAAAAAUGGAUUUUC_ ...............................................(((((((((((((....(((((((...)))))))....))))))))))))).................... ( -6.28 = -10.03 + 3.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:50 2011