| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,241,547 – 12,241,651 |
| Length | 104 |
| Max. P | 0.548899 |
| Location | 12,241,547 – 12,241,651 |
|---|---|
| Length | 104 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 80.83 |
| Shannon entropy | 0.39518 |
| G+C content | 0.47361 |
| Mean single sequence MFE | -29.54 |
| Consensus MFE | -14.55 |
| Energy contribution | -14.63 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12241547 104 + 21146708 AUGUCCAACGUCCAUUGCUACCAUCGUUUCUCUGUUUGGUUGAAAACCACAAAUUAAGCAG-AGAAAUCCUUGCCGUGCAUGCGAACGAUGGCGCCCGGGGAAAA ..........(((...((..(((((((((((((((((((((..........))))))))))-))).........(((....))))))))))).))....)))... ( -31.00, z-score = -1.65, R) >droSim1.chr2R 10972609 104 + 19596830 AUGUCCAUCGUCCAUUGCUACCAUCGUUUCUCUGUUUGGUUGAAAACCACAAAUUAAGCAG-AGAAAUCCUUGCCGUGCAUGCGAACGAUGGCGCCCGUGGAAAA ..........(((((.((..(((((((((((((((((((((..........))))))))))-))).........(((....))))))))))).))..)))))... ( -33.10, z-score = -3.10, R) >droSec1.super_1 9739314 104 + 14215200 AUGUCCAUCGUCCAUUGCUACCAUCGUUUCUCUGUUUGGUUGAAAACCACAAAUUAAGCAG-AGAAAUCCUUGCCGUGCAUGCGAACGAUGGCGCCUGUGGAAAA ..........(((((.((..(((((((((((((((((((((..........))))))))))-))).........(((....))))))))))).))..)))))... ( -34.00, z-score = -3.44, R) >droYak2.chr2R 4394809 104 - 21139217 ACGUCCAUCGUCCAUUGCUACCAUCGUUUCUCUGUUUGGUUGAAAACCACAAAUUAAGCAG-AGAAAUCCUUGCCGUGCAUGCCAACGAUGGCGCCCAGGGAAAA .((.(((((((....(((...((..((((((((((((((((..........))))))))))-))))))...))....))).....)))))))))........... ( -32.40, z-score = -2.79, R) >droAna3.scaffold_13266 15616848 97 + 19884421 ----ACCUCGUCCAUCGCUGC--UCGUUGUUCUGUUUGGUUGAAAACCACAAAUUAAGCAG-AGAAAUCCUUGCCGUGCAUGCGAACGAUGGCGCCGG-GCAAAC ----.....((((..(((((.--(((((.((((((((((((..........))))))))))-))..........(((....)))))))))))))..))-)).... ( -28.70, z-score = -0.90, R) >dp4.chr3 15874800 100 - 19779522 -GAGUCCGCGUCCAUCGCUGC--UCGUUGUUCUGUUUGGUUGAAAACCACAAAUUAAGCAG-AGAAAUCCUUGCCGUGCAUGCGAACGAUGGCGCCGCUGCAAA- -.(((..(((.((((((..((--..(((.((((((((((((..........))))))))))-)).)))....))(((....)))..))))))))).))).....- ( -28.00, z-score = -0.13, R) >droWil1.scaffold_180700 5983977 83 - 6630534 ---------------UGCUUGUAUGUGCAUUCUGUUUGGUUGAAAGCCACAAAUUAAGCAGCAGAAAUCCUUUCCGUGCAGGCAAAAAA-----CCAAAAAAA-- ---------------((((((((((......((((((((((..........))))))))))..(((.....))))))))))))).....-----.........-- ( -19.60, z-score = -1.24, R) >consensus AUGUCCAUCGUCCAUUGCUACCAUCGUUUCUCUGUUUGGUUGAAAACCACAAAUUAAGCAG_AGAAAUCCUUGCCGUGCAUGCGAACGAUGGCGCCCGUGGAAAA ........((.((((((............((((((((((((..........)))))))))).))......((((.......)))).))))))))........... (-14.55 = -14.63 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:06 2011