| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,240,136 – 12,240,226 |
| Length | 90 |
| Max. P | 0.770295 |
| Location | 12,240,136 – 12,240,226 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.21 |
| Shannon entropy | 0.41901 |
| G+C content | 0.33547 |
| Mean single sequence MFE | -20.97 |
| Consensus MFE | -11.67 |
| Energy contribution | -11.49 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12240136 90 - 21146708 ----UUUUG------CUCCAACUAAAUGCCAAUUAAAAUGCGUAAUUA-UUUUUUAAUGGCAUUUUGUGGUCA--AUAUCGGACGAUUGACGAUGAUUGCACA--------- ----...((------(.(((...((((((((.((((((..........-..))))))))))))))..)))...--.(((((.........)))))...)))..--------- ( -20.40, z-score = -1.64, R) >droSim1.chr2R 10971161 88 - 19596830 ----UUUUG------CCCCAACUAAAUGCCAAUUAAAAUGCGUAAUUAUUUUUUUAAUGGCA-UUUGUGGCCA--AUAUCGGGCGAUUGACGAUAAUCGCC----------- ----....(------((...((.((((((((.((((((.............)))))))))))-))))))))..--......((((((((....))))))))----------- ( -23.32, z-score = -1.94, R) >droSec1.super_1 9737867 90 - 14215200 ----UUUUG------CCCCAACUAAAUGCCAAUUAAAAUACGUAAUUA-UUUUUUAAUGGCAUUUUGUGGUCA--AUAUCGGGCGAUUGACGAUGAUUGCACA--------- ----..(((------(((..((.((((((((.((((((..........-..)))))))))))))).))(((..--..))))))))).................--------- ( -20.50, z-score = -1.38, R) >droYak2.chr2R 4393351 90 + 21139217 ----UUUUG------CCCCAACUAAAUGCCAAUUAAAAUGCGUAAUUA-UUUUUUAAUGGCAUUUUGUGGUCA--AUAUCGGGCGAUUGACGAUGAUUGCACA--------- ----..(((------(((..((.((((((((.((((((..........-..)))))))))))))).))(((..--..))))))))).................--------- ( -20.50, z-score = -0.88, R) >droEre2.scaffold_4845 8970160 89 + 22589142 ----UUUUG------CC-CAACUAAAUGCCAAUUAAAAUGCGUAAUUA-UUUUUUAAUGGCAUUUUGUGGUCA--AUAUCGGGCGAUUGACGAUGAUUGCACA--------- ----..(((------.(-((...((((((((.((((((..........-..))))))))))))))..))).))--)......((((((......))))))...--------- ( -22.30, z-score = -1.65, R) >droAna3.scaffold_13266 15615528 92 - 19884421 ----UUUUG------CCUCAACUAAAUGCCAAUUAAAAUUCGUAAUUA-UUUUUUAAUGGCAUUUUGUGGUCAAUAUAUCGUACGAUUGGCGAUGAUUGCGCC--------- ----.....------.....((.((((((((.((((((..........-..)))))))))))))).))(((((((.((((((.......)))))))))).)))--------- ( -21.20, z-score = -1.73, R) >droPer1.super_2 4946071 85 + 9036312 ----UUUUGC-----CCCGAACUAAAUGCCAAUUAAAAUUCGUAAUUA-UUUUUUAAUGGCAUUUUGUGGUCA--AUAUCCGAUGAAUGGUUGGACA--------------- ----..(((.-----((...((.((((((((.((((((..........-..)))))))))))))).)))).))--)..((((((.....))))))..--------------- ( -18.80, z-score = -1.32, R) >dp4.chr3 15873375 85 + 19779522 ----UUUUGC-----CCCGAACUAAAUGCCAAUUAAAAUUCGUAAUUA-UUUUUUAAUGGCAUUUUGUGGUCA--AUAUCCGAUGAAUGGUUGGACA--------------- ----..(((.-----((...((.((((((((.((((((..........-..)))))))))))))).)))).))--)..((((((.....))))))..--------------- ( -18.80, z-score = -1.32, R) >droWil1.scaffold_180700 5981363 106 + 6630534 UUUUUUUUGUGUAUGCCUCAACUAAAUGCCAAUUAAAAUUCGUAAUUA-UUUUUUAAUGGCAUUUUGUGGUCAAUAUAUCCGGCGAAUCAUUGCACACAGCAGAGAA----- (((((.((((((..(((.(((...(((((((.((((((..........-..)))))))))))))))).)))...........((((....)))))))))).))))).----- ( -24.20, z-score = -1.97, R) >droMoj3.scaffold_6496 12397285 93 - 26866924 -----UUUGU-----CCUCAACUAAAUGCCAAUUAAAAUUCGUAAUUA-UUUUUUAAUGGCAUUUUGUGGUCA--AUAUCCGGCGAAUGAUUUCAAAAAUCCCUUU------ -----(((((-----(....((.((((((((.((((((..........-..)))))))))))))).))((...--....))))))))...................------ ( -16.80, z-score = -1.72, R) >droVir3.scaffold_12875 18741642 94 - 20611582 -----UUUUG-----CCUCAACUAAAUGCCAAUUAAAAUUCGUAAUUA-UUUUUUAAUGGCAUUUUGUGGUCA--AUAUCCGGCGAAUCAUUUCAAAAAUCCCUUUU----- -----.((((-----((...((.((((((((.((((((..........-..)))))))))))))).))((...--....))))))))....................----- ( -20.10, z-score = -3.24, R) >droGri2.scaffold_15245 4823795 99 - 18325388 ----AUUUG------CUUCUGGCAAAUGGCAUUUAAAAUGCGUAAUUA-UUUUUUAAUGGCAUUUUGUGGUCA--ACAUCCGGCGAAUCAUUUCAUUUCCAAAUGUCGCUGU ----.((((------(.....)))))((((...((((((((...((((-.....)))).))))))))..))))--.....((((((..(((((.......))))))))))). ( -24.70, z-score = -2.08, R) >consensus ____UUUUG______CCCCAACUAAAUGCCAAUUAAAAUUCGUAAUUA_UUUUUUAAUGGCAUUUUGUGGUCA__AUAUCCGGCGAAUGACGAUAAUUGCACA_________ ....................((.((((((((.((((((.............)))))))))))))).)).(((.........)))............................ (-11.67 = -11.49 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:27:06 2011